Locus 1883

Sequence ID 2L_DroMel_CAF1
Location 5,172,822 – 5,172,914
Length 92
Max. P 0.523265
window3026

overview

Window 6

Location 5,172,822 – 5,172,914
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 73.28
Mean single sequence MFE -21.58
Consensus MFE -8.10
Energy contribution -8.52
Covariance contribution 0.42
Combinations/Pair 1.25
Mean z-score -1.93
Structure conservation index 0.38
SVM decision value -0.02
SVM RNA-class probability 0.523265
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5172822 92 + 22407834
UUCAAACAAACAUACUCAGUGCCGAUAGCACUUUGUGGUCUUCAAUUGUCCGACAAGGUGCCCAGGAACCUAUUACCAAAAUGACACAAUCU---
..................(((.((...(((((((((((.(.......).)).)))))))))..((....))..........)).))).....--- ( -18.10)
>DroPse_CAF1 66112 95 + 1
UAGAACCGAAUCUUCCGCAGACCAGUAAUGCAUUAUGGUCUUCGAUCGUGCGACAAGGGGUACAGGAACCCUUCACGAAGAUAACGCAACAAAGC
.........((((((((.((((((...........)))))).))...(((.....((((((......)))))))))))))))............. ( -23.60)
>DroSec_CAF1 55943 92 + 1
UUCAAACAAACACACUCAGUUCCGAUAGCACUUUGUGGUCUUCAAUUCUCCGACAAGGUGUCCAGGAACCUAUUACAAAACUGACAAAAUCU---
..................(((((....(((((((((((...........)).)))))))))...))))).......................--- ( -18.70)
>DroEre_CAF1 55028 92 + 1
UUCAUACGAACAUACCCAGUUCCGAUAGCACUUUGUGGUCUUCAAUUGUCCGACAAGGUGUUCAGGAACCUAUUACAAAAAUUACUCAAUCU---
..................(((((...((((((((((((.(.......).)).))))))))))..))))).......................--- ( -21.60)
>DroYak_CAF1 54808 92 + 1
CUCCUACAAACGUACCCAGUUCCGAUAGCACUUUGUGGUCGUCAAUUGUCCGACAAGGUGUUCAGGAACCCAUUACAAAAAUGACUCAACCA---
...........(((....(((((...((((((((((((.((.....)).)).))))))))))..)))))....)))................--- ( -23.90)
>DroPer_CAF1 65964 95 + 1
UAGAACCGAAUCUUCCGCAGACCAGUAAUGCAUUAUGGUCUUCGAUCGUGCGACAAGGGGUACAGGAACCCUUCACGAAGAUAACGCAACAAAGC
.........((((((((.((((((...........)))))).))...(((.....((((((......)))))))))))))))............. ( -23.60)
>consensus
UUCAAACAAACAUACCCAGUUCCGAUAGCACUUUGUGGUCUUCAAUUGUCCGACAAGGUGUACAGGAACCCAUUACAAAAAUGACACAACCA___
.....................((....(((((((((.(............).)))))))))...))............................. ( -8.10 =  -8.52 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:41 2006