Locus 1882

Sequence ID 2L_DroMel_CAF1
Location 5,166,121 – 5,166,215
Length 94
Max. P 0.602856
window3025

overview

Window 5

Location 5,166,121 – 5,166,215
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 65.28
Mean single sequence MFE -27.18
Consensus MFE -11.02
Energy contribution -11.26
Covariance contribution 0.24
Combinations/Pair 1.45
Mean z-score -1.77
Structure conservation index 0.41
SVM decision value 0.14
SVM RNA-class probability 0.602856
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5166121 94 - 22407834
GCUAGAAGACUCAUCGACGGGAAGACCGGCAUAUGCUGGCUUUUUGGGUUCUUCAGGUAUCUUCUCCGGUUCUACUACCUUCUUGGGUUCUUCG--
....(((((((((....(((((((.(((((....)))))))))))).........((........))(((......)))....)))).))))).-- ( -27.10)
>DroVir_CAF1 87968 91 - 1
AUUGCUUGACUCAUCAACGGGCAGCCCAGCAUAUGCUGGUUUCUUGGGCUCCUCGAGUUUCUGUUCCGGCUCCACAGC---CUUUGGCUCUACU--
..((((((.........))))))(((((((....)))))...(..(((((....(((((........)))))...)))---))..)))......-- ( -24.30)
>DroSim_CAF1 29098 94 - 1
GCUAGAAGAGUCAUCGACCGGAAGACCGGCAUAUGCUGGUUUUUUGGGUUCUUCAGGUUUCUUCUCCGGUUCUACUACCUUCUUUGGUUCCUCG--
....((.((..((..(((((((((((((((....)))))))))))))........((........))(((......))).))..))..)).)).-- ( -29.60)
>DroWil_CAF1 52990 93 - 1
GUUUGUUGAAUCAUCGACAGGCAGUCCUGCAUACGCUGGUUUCUUUGGCUCCUCUGGUUUAUUUUCAGACUCGGCAGG---UUUAGAUUCCUCAAU
(((((((((....)))))))))...(((((....((..(.....)..))...(((((.......)))))....)))))---............... ( -25.40)
>DroAna_CAF1 50883 73 - 1
GCUGGAGGAAUCGUCAACAGGCAGACCGGCGUAGGCUGGUUUCUUUGGCUCCUCUGGCUUU---------------------UUGAUUUCCUCA--
((..(((((...(((((..((.((((((((....))))))))))))))))))))..))...---------------------............-- ( -29.50)
>consensus
GCUAGAAGAAUCAUCGACAGGCAGACCGGCAUAUGCUGGUUUCUUGGGCUCCUCAGGUUUCUUCUCCGGCUCUACAAC___CUUGGGUUCCUCA__
(((.(((((..(.....((((.((.(((((....))))))).)))))..))))).)))...................................... (-11.02 = -11.26 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:40 2006