Locus 1880

Sequence ID 2L_DroMel_CAF1
Location 5,158,051 – 5,158,143
Length 92
Max. P 0.999638
window3023

overview

Window 3

Location 5,158,051 – 5,158,143
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 91.48
Mean single sequence MFE -28.07
Consensus MFE -25.88
Energy contribution -25.72
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -3.04
Structure conservation index 0.92
SVM decision value 3.82
SVM RNA-class probability 0.999638
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5158051 92 + 22407834
GGCGUCUUCCGUUUGCCCCUGCCACCGAUUUCCUUCUCCCAGGAACGGUGGCUAC-GGUACAACUGUCAACUGCCGUCAUUACUCUAAUCAAU
(((((...(.(((((((...(((((((..(((((......))))))))))))...-)))).))).)...)).))).................. ( -29.30)
>DroSec_CAF1 40387 92 + 1
GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUAC-GGCACAACUGUCAACUGCCGUCACUACUCUAAUCAAU
(((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -30.30)
>DroSim_CAF1 20538 92 + 1
GGCGUCUUCCGUUUGCCCCUGUCACCGAUCUCCUUCUCCCAGGAACGGUGGCUAC-GGCACAACUGUCAACUGCCGUCACUACUCUAAUCAAU
(((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -27.60)
>DroEre_CAF1 40425 92 + 1
GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUUC-GGUACAACUGUCAACUGCCGUCACUACUCUAAUCAAU
(((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -28.30)
>DroYak_CAF1 40464 92 + 1
GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUUC-GGUACAACUGUCAACUGCCGUCACUACUCUAAUCAAU
(((((...(.(((((((...(((((((...((((......)))).)))))))...-)))).))).)...)).))).................. ( -28.30)
>DroAna_CAF1 42941 93 + 1
GCCGUCUUCCGUUUGUCAUUGCCACCGAUCUCCUUCUCCCGGGUGCGGUGGCCUCUGGCCAAACAGUAAACUGCCGUCACUACUCAAAUAACA
((.((...(.((((((((..(((((((....(((......)))..)))))))...))).))))).)...)).))................... ( -24.60)
>consensus
GGCGUCUUCCGUUUGCCCCUGCCACCGAUCUCCUUCUCCCAGGAACGGUGGCUAC_GGCACAACUGUCAACUGCCGUCACUACUCUAAUCAAU
(((((...(.(((((((...(((((((...((((......)))).)))))))....)))).))).)...)).))).................. (-25.88 = -25.72 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:38 2006