Locus 1876

Sequence ID 2L_DroMel_CAF1
Location 5,148,732 – 5,148,852
Length 120
Max. P 0.829394
window3016

overview

Window 6

Location 5,148,732 – 5,148,852
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.94
Mean single sequence MFE -25.26
Consensus MFE -22.21
Energy contribution -22.66
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.829394
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5148732 120 + 22407834
ACUGCGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGGCGCUCUCUAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA
.((((((((.((................)).))))..........(((((...............((((((.......)))))).((......))))))))))).((((.....)))).. ( -28.99)
>DroVir_CAF1 66658 120 + 1
ACUGCGUGAAGAAUCAAAUGAACUUAAAUCAUCACAUAAAGAAAUCGAGGCGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA
.((((((((.((................)).))))..........(((((...............((((((.......)))))).((......))))))))))).((((.....)))).. ( -28.99)
>DroPse_CAF1 37593 120 + 1
AUUACGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGACUCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA
.....((((.((...................((.......))....(((.....)))........)).))))..(((((((((............)))))).)))((((.....)))).. ( -23.50)
>DroGri_CAF1 58310 120 + 1
ACUGCGUGAAGAAUCAAAUGAACUUAAAUCAUCACAUAAAGAAAUCGAAGCGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA
.((((((((.((................)).))))..........(((.................((((((.......)))))).((......))..))))))).((((.....)))).. ( -23.29)
>DroMoj_CAF1 85834 120 + 1
ACUGCGUGAAGAAUCAAAUGAACUUAAAUCAUCACAUAAAGAAAUCGAAACGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA
.((((((((.((................)).))))..........(((.................((((((.......)))))).((......))..))))))).((((.....)))).. ( -23.29)
>DroPer_CAF1 37449 120 + 1
AUUACGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGACUCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA
.....((((.((...................((.......))....(((.....)))........)).))))..(((((((((............)))))).)))((((.....)))).. ( -23.50)
>consensus
ACUGCGUGAAGAAUCAAAUCAACUUAAAUCAUCACAUAAAGAAAUCGAGACGCUCUCAAAAUCCAUCCUCACAUUCCUUGGGGAAGUACACAAACCCUCGGCGGAGGCCAUACAGGCCAA
.((((((((.((................)).))))..........((((................((((((.......)))))).((......)).)))))))).((((.....)))).. (-22.21 = -22.66 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:31 2006