Locus 1875

Sequence ID 2L_DroMel_CAF1
Location 5,146,045 – 5,146,137
Length 92
Max. P 0.744629
window3015

overview

Window 5

Location 5,146,045 – 5,146,137
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 82.93
Mean single sequence MFE -22.58
Consensus MFE -14.44
Energy contribution -16.04
Covariance contribution 1.60
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.64
SVM decision value 0.46
SVM RNA-class probability 0.744629
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5146045 92 + 22407834
AAUUGUUGUUGCUGCCAAUUGUGAAAGAGAGAAUGGCAGCAAUACAGAAAGAGAGUGACGUGCACACGGUGGCGUAUGCGUAAUAUACAUAU
..((((.((((((((((.((.(....)...)).)))))))))))))).......(((...((((.(((....))).)))).....))).... ( -24.40)
>DroSec_CAF1 28709 92 + 1
AAUUGUUGUUGUUGCCAAUUGUGAAAGAGAGAAUGGCAGCAAUACCGAAAGAGAGUGACGUGUACACGGUGGCGUAUGCUUAAUAUACAUAU
..(((.(((((((((((.((.(....)...)).))))))))))).)))......((.((((....)).)).))(((((.....))))).... ( -22.00)
>DroSim_CAF1 6658 81 + 1
AAUUGUUGUUGUUGCCAAUCGUGAAAGAGAGAAUGGCAGCAAUACGGAAAGAGAGUGACGUGUACAUA------UA-----UAUAUACAUAU
..((((.((((((((((.((.(....)...)).))))))))))))))............(((((....------..-----..))))).... ( -19.40)
>DroEre_CAF1 28455 92 + 1
AAUUGUUGUUGCUGCCAAUUAUAAAAGAGAGAGAGACAGCGACAAAGAGAGUGAGUGACGUGUACACGGUGGCGUAUGCGUUAUAUACACAU
.....(((((((((((..((........))..).).))))))))).....(((.(((((((((((.(....).))))))))))).))).... ( -25.70)
>DroYak_CAF1 28438 90 + 1
AAUUGUUGUUGUUGCCAAUUAUAAAAGAG--GGAGUCAGCGACACAGAAAGAGAGUGACGUGUACACGGUGGCGUAUGCGUGAUAUACACAU
...((((((((((.((..((....))..)--).)).))))))))..........((.((((((((.(....).)))))))).))........ ( -21.40)
>consensus
AAUUGUUGUUGUUGCCAAUUGUGAAAGAGAGAAUGGCAGCAAUACAGAAAGAGAGUGACGUGUACACGGUGGCGUAUGCGUAAUAUACAUAU
......(((((((((((.((..........)).)))))))))))..........((.((((((((........)))))))).))........ (-14.44 = -16.04 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:30 2006