Locus 1874

Sequence ID 2L_DroMel_CAF1
Location 5,144,955 – 5,145,053
Length 98
Max. P 0.949962
window3014

overview

Window 4

Location 5,144,955 – 5,145,053
Length 98
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.72
Mean single sequence MFE -28.45
Consensus MFE -15.99
Energy contribution -17.38
Covariance contribution 1.39
Combinations/Pair 1.16
Mean z-score -2.55
Structure conservation index 0.56
SVM decision value 1.40
SVM RNA-class probability 0.949962
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5144955 98 + 22407834
CUCUUUUGUAUGUAUUUAGGCAGUCUUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG
.....(((...((((((((((..((....))...))).)))-----)))).))).(.((((((((((((((...........)))))))))))))).)..... ( -31.10)
>DroSec_CAF1 27634 89 + 1
CUCUUUUGUAUGUAUUUAGGCA---------AUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG
.....(((...((((((((((.---------...))).)))-----)))).))).(.((((((((((((((...........)))))))))))))).)..... ( -30.10)
>DroSim_CAF1 5576 98 + 1
CUCUUUUGUGUGUAUUUAGGCAGUCUUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG
.......((..((((((((((..((....))...))).)))-----))))...))(.((((((((((((((...........)))))))))))))).)..... ( -32.00)
>DroEre_CAF1 27344 96 + 1
CUCU--UGUGUGUAUUUAGGCACUCCUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUGCAUGCUUUGUGCAUAUAAGUGUAUAGUCGAAGAACCAG
(.((--(((((((((..(((((..(..(((((((((..(((-----....))))))))))))..)..))))).))))))))))).)................. ( -27.50)
>DroYak_CAF1 27358 96 + 1
CUCU--UGUGUGUAUUUAGGCACUUUUUUGAAUAGCCAUGA-----AUAUUCAGCUGUUCGACUCCAUGCUUUGUGCAUAUAAGUGUGUAGCCGACGAACCAG
(.((--(((((((((..(((((.....(((((((((..(((-----....)))))))))))).....))))).))))))))))).)................. ( -27.10)
>DroAna_CAF1 30116 95 + 1
A---UAUGUAGUUAUUUAUGUAUUUGCU---UUAGACUUGUAUGGUAUACACAACUGUUGGCCUGCAUAU--GGUGCGUUUAAGUAAGUGGUCGAAAGACCUG
.---.((((((....))))))(((((((---(.((((......(((..(((....)))..))).((((..--.))))))))))))))))((((....)))).. ( -22.90)
>consensus
CUCUUUUGUAUGUAUUUAGGCACUCUUUUGAAUAGCCAUGA_____AUAUUCAGCUGUUCGACUGCAUGCUGUGUGCAUAUAAGUGUGCAGUCGAAGAACCAG
......(((((((((...((((.....(((((((((..(((.........)))))))))))).....))))..)))))))))..................... (-15.99 = -17.38 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:29 2006