Locus 1873

Sequence ID 2L_DroMel_CAF1
Location 5,143,615 – 5,143,735
Length 120
Max. P 0.528901
window3013

overview

Window 3

Location 5,143,615 – 5,143,735
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.67
Mean single sequence MFE -33.47
Consensus MFE -18.62
Energy contribution -17.02
Covariance contribution -1.60
Combinations/Pair 1.55
Mean z-score -1.89
Structure conservation index 0.56
SVM decision value -0.01
SVM RNA-class probability 0.528901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5143615 120 + 22407834
AUUUUGGCCCAGCAGGAUGAUAUGAUUAAACUGAUUGAAGAUCAGUUGGCCCAUCUUCGCCAGCUUCUGCUGCUCCGCGAGCAGUUUAUUGCUUUGAUUAAUGAGAUUAUUGCUUUUAUC
.....((..((((((((((((.(((((.....)))))...))))((((((........))))))))))))))..))..(((((((......(((........)))...)))))))..... ( -30.90)
>DroVir_CAF1 60638 120 + 1
AUUCUGACACAGCAGGACGAUAUGAUUAAAUUGAUUGAGGAUCAGUUGGCGCAUCUGCGCCAGCUGCUGAUGCUGCGCGAGCAAUUUAUUGCGCUGAUCAAUGAGAUAAUUGCCUUCAUU
...........(.(((.((((...(((..(((((((.((.((((((((((((....))))))...)))))).))((((((........)))))).)))))))..))).))))))).)... ( -41.10)
>DroGri_CAF1 52203 120 + 1
AUUCUCGCACAACAGGACGACAUGAUUAAAUUGAUUGAGGAUCAAUUGGCACAUUUGCGUCAAUUGUUGCUGCUGCGCGAACAAUUCAUCGCACUCAUCAAUGAAAUUAUUGCCUUCAUU
.............(((.(((..(((((..((((((.(((...((((((((.(....).))))))))..((....))((((........)))).)))))))))..)))))))))))..... ( -28.40)
>DroWil_CAF1 26309 120 + 1
AUUCUAACUCAACAAGACGACAUGAUCAAAAUGAUUGAAGAUCAAUUGGCUCAUUUGCGACAGCUUCUUCUGCUUCGUGAGCAAUUUAUAGCCCUGAUUAAUGAAAUUAUUGCCUUCAUC
.....................((((....(((((((...(((((...((((...((((.(((((.......)))..))..)))).....)))).))))).....)))))))....)))). ( -19.90)
>DroMoj_CAF1 80384 120 + 1
AUCCUGGCCCAGCAGGACGAUAUGAUUAAGUUGAUUGAGGAUCAGUUGGCACAUCUGCGUCAGCUGUUGAUGCUGCGUGAGCAAUUCAUUGCGCUAAUCAACGAGAUCAUUGCCUUCAUU
.(((((......))))).((.((((((..((((((((((.((((((((((.(....).))))))...)))).))(((..(........)..)))))))))))..)))))).....))... ( -37.80)
>DroAna_CAF1 27607 120 + 1
AUCUUGGCCCAACAAGACGAUAUGAUCAAGCUGAUCGAGGAUCAGCUGGCCCAUCUCCGCCAGCUUCUGCUGCUCCGCGAGCAGUUCAUUGCCUUGAUCAACGAAAUCAUCGCCUUCAUC
.(((((......)))))(((..((((...(.(((((((((...(((((((........)))))))...(((((((...)))))))......))))))))).)...)))))))........ ( -42.70)
>consensus
AUUCUGGCCCAACAGGACGAUAUGAUUAAAUUGAUUGAGGAUCAGUUGGCACAUCUGCGCCAGCUGCUGCUGCUGCGCGAGCAAUUCAUUGCCCUGAUCAAUGAAAUUAUUGCCUUCAUC
.(((((......)))))......((((.....))))((((...(((((((........)))))))...........((((....(((((((.......)))))))....))))))))... (-18.62 = -17.02 +  -1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:28 2006