| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,124,471 – 5,124,590 |
| Length | 119 |
| Max. P | 0.625057 |
| Location | 5,124,471 – 5,124,590 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.12 |
| Mean single sequence MFE | -39.07 |
| Consensus MFE | -25.48 |
| Energy contribution | -26.78 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5124471 119 + 22407834 AGCAA-GAGAAGGAAUCUCUGGUGCGCAUACGUGCACAAUUGCCUGCCAAGCUGCAUCUGUUCCACCAGCUUCAGAUCCAACAGGAAUCCCUGGAGGCUGGACAAAAAGAGAUUCACCAG .....-......((((((((.((((((....))))))..(((((.(((((((((............)))))).........((((....))))..))).)).)))..))))))))..... ( -40.00) >DroVir_CAF1 41024 119 + 1 AGCAG-GAGAAGGAGUCGCUGGUGCGCAUACGCGCCCAAAUGCCCGCCAAGCUGCAUCUGUUCCAUCAGCUGCAAAUUCAACAGGAGUCACUCGAGGCGGGCCAAAAGGAAAUUCAUCAA .....-((....((((..((((.((((....))))))....(((((((....((((.(((......))).))))..........(((...)))..))))))).....))..)))).)).. ( -38.90) >DroGri_CAF1 32678 119 + 1 AGCAG-GAGAAGGAGUCUCUGGUGCGCAUACGCGCCCAAAUGCCCGCCAAGCUGCACCUUUUCCAUCAGCUGCAGAUACAGCAAGAAUCGCUGGAGGCGGGCCAAAAGGAAAUUCAUCAA .....-((....((((.(((((.((((....))))))....(((((((...(((((.((........)).)))))...((((.......))))..))))))).....))).)))).)).. ( -43.70) >DroWil_CAF1 7265 119 + 1 AACAG-GAGAAGGAAUCAUUGGUGCGCAUUCGCGCUCAAUUGCCAGCCAAACUGCAUCUCUAUCAUCAACUGCAAAUUCAGCAAGAAUCCCUAGAGGCCGGACAGAAGGAAAUCCAUCAA ....(-((...((....(((((.((((....)))))))))..))..((...((((.((((((........(((.......)))........))))))...).)))..))...)))..... ( -25.09) >DroAna_CAF1 8386 119 + 1 AGCAG-GAGAAGGAGUCCCUCGUGCGCAUUCGCGCUCAGUUGCCGGCUAAGUUGCAUCUGUUCCACCAGCUGCAGAUUCAGCAGGAAUCGCUGGAAGCCGGACAGAAGGAAAUCCACCAA .....-.....(((.(((.(((.((((....)))).)...((((((((...(((((.(((......))).))))).((((((.......)))))))))))).)))).)))..)))..... ( -42.70) >DroPer_CAF1 10493 120 + 1 AACAGGGAGAAGGAAUCCCUAGUGCGCAUACGCGCACAGCUGCCGGCCAAGCUGCAUCUCUUCCAUCAACUGCAGAUCCAACAGGAAUCAUUGGAGGCUGGUCAGAAGGAGAUCCGUCAG ........((.(((.(((((.((((((....))))))..(((((((((...(((((..............))))).(((((.........))))))))))).))).))).))))).)).. ( -44.04) >consensus AGCAG_GAGAAGGAAUCCCUGGUGCGCAUACGCGCACAAUUGCCCGCCAAGCUGCAUCUGUUCCAUCAGCUGCAGAUUCAACAGGAAUCACUGGAGGCCGGACAAAAGGAAAUCCAUCAA ........((.(((.(((...(.((((....)))).)..(((((((((...(((((.((........)).))))).(((((.........))))))))))).)))..)))..))).)).. (-25.48 = -26.78 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:21 2006