| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,122,535 – 5,122,633 |
| Length | 98 |
| Max. P | 0.707360 |
| Location | 5,122,535 – 5,122,633 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.15 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -17.33 |
| Energy contribution | -16.62 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5122535 98 - 22407834 UGAA-----CUACUUAG-------CAUAGGGUGCGUCCACUCACUUUGGCAAGGCAUUAGUCACCCAGUUGAGCAGGGUCUUCCUGGCACCCUGCUUCCACUUCUCAGCC .(((-----......((-------((..((((((.....((((..((((...(((....)))..)))).))))((((.....)))))))))))))).....)))...... ( -29.30) >DroPse_CAF1 8057 103 - 1 ------CAAAAACUUUGCAUUUCAUAUACAAU-UCUCUACUCACUUUGGCAGGGCAUUUGUCACCCAAUUGAGUAGCGUUUUUCUGGCUCCCUGCUUCCAUUUCUCAGCC ------..........((...........((.-.(.(((((((..((((...(((....)))..)))).))))))).)..))...(((.....)))...........)). ( -18.70) >DroSec_CAF1 5129 98 - 1 UGAA-----CAACUUAG-------UAUAGGUUUCGCCCACUCACUUUGGCAAGGCAUUAGUCACCCAGUUGAGCAGGGUCUUCCUGGCACCCUGCUUCCACUUCUCAGCC (((.-----(((((..(-------(.(((((((.(((..........))).)))).)))...))..)))))((((((((((....)).))))))))........)))... ( -24.90) >DroEre_CAF1 4908 99 - 1 UGAAUACAACU----AG-------UAUAGGUCUAGUCCACUCACUUUGGCAAGGCAUUGGUCACCCAGUUGAGCAGGGUCUUCCUGGCACCCUGCUUCCACUUCUCAGCC (((...(((((----..-------.....((((.(.(((.......)))).))))...((....)))))))((((((((((....)).))))))))........)))... ( -26.20) >DroWil_CAF1 5337 94 - 1 AGGAUU---CCAUUCAG-------UACU------UGUUACUUACUUUGGCAAGGCAUUUGUCACCCAGUUAAGUAAUGUUUUACGGGCACCUUGCUUCCAUUUCUCAGCC .(((..---.......(-------((..------(((((((((..((((...(((....)))..)))).)))))))))...))).(((.....))))))........... ( -18.30) >DroYak_CAF1 4938 103 - 1 UGAAUAUAACUACUUAG-------UAAAGAUGGCGUCCACUCACUUUGGCAAGGCAUUGGUCACCCAGUUGAGCAGGGUCUUCCUGGCACCCUGCUUCCACUUCUCAGCC ............(..((-------(..((.(((...))))).)))..)....((((((((....))))).(((((((((((....)).)))))))))..........))) ( -24.60) >consensus UGAA_____CUACUUAG_______UAUAGGUU_CGUCCACUCACUUUGGCAAGGCAUUAGUCACCCAGUUGAGCAGGGUCUUCCUGGCACCCUGCUUCCACUUCUCAGCC ...............................................(((..(((....)))....(((.(((((((((((....)).)))))))))..))).....))) (-17.33 = -16.62 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:17 2006