| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,113,204 – 5,113,294 |
| Length | 90 |
| Max. P | 0.719709 |
| Location | 5,113,204 – 5,113,294 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 87.13 |
| Mean single sequence MFE | -27.69 |
| Consensus MFE | -21.94 |
| Energy contribution | -21.62 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5113204 90 - 22407834 CUUUGUGGGUUAAGAGCAAACU-UGUGGAUGCUUCAAGUUCGGCU-UUGUGUGUAAACUUGAUUCGCUUCUUAACUUACAGAGCUCA---GGUCA ((((((((((((((((((..(.-...)..))).(((((((..((.-......)).)))))))......)))))))))))))))....---..... ( -27.60) >DroSec_CAF1 13412 90 - 1 CUUUGUGGGUUAAGAGCAAACU-UGUGGAUGCUUCAAGUUCGGUU-UUGUGUGUAAACUUGAUUCGCCUCUUAAUUUACAGAGCUUA---GGUCA ((((((((((((((((......-.(((((....(((((((.....-.........))))))))))))))))))))))))))))....---..... ( -23.25) >DroSim_CAF1 13252 90 - 1 CUUUGUGGGUUAAGAGCAAACU-UGUGGAUGCUUCAAGUUCGGCU-UUGUGUGUAAACUUGAUUCGCUUCUUAACUUACAGAGAUCA---GGUCA ((((((((((((((((((..(.-...)..))).(((((((..((.-......)).)))))))......)))))))))))))))....---..... ( -28.30) >DroEre_CAF1 14378 89 - 1 CUUUGUGGGUUAAGAGCGAACU-UGUGGGAGCUUCAAGUUCGGCU--UGUGUGCAAACUUGAUUCGCUUCUUAAUUUACAGAGCUCA---GCUCG ...(((((((((((((((((((-(....)))..(((((((..((.--.....)).)))))))))))).))))))))))))((((...---)))). ( -30.50) >DroYak_CAF1 13486 91 - 1 CUUUGUGGGUUAAGAGCGAACC-UGUGGGUGCUUUAAGUUCGGCUUUUGUGUGUAAACUUGAUUCGCUUCUUAGCUUACAGAGCUCA---GCUCA ...(((((((((((((((((((-....)))...(((((((..((........)).))))))).)))).))))))))))))((((...---)))). ( -31.40) >DroAna_CAF1 16701 93 - 1 CUUUGUGGGUUAAGAGCAAACUUUGUGUGUACUUGAAGUUUGGCU-UU-UGGACAAACUUGUUUCGAUUCUUAGCUUACAAAUCUCAGCAGCUCG .((((((((((((((((((((...((.(((.((.((((.....))-))-.))))).))..)))).).)))))))))))))))............. ( -25.10) >consensus CUUUGUGGGUUAAGAGCAAACU_UGUGGAUGCUUCAAGUUCGGCU_UUGUGUGUAAACUUGAUUCGCUUCUUAACUUACAGAGCUCA___GCUCA (((((((((((((((((.......((....)).(((((((..((........)).)))))))...)).)))))))))))))))............ (-21.94 = -21.62 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:15 2006