Locus 1862

Sequence ID 2L_DroMel_CAF1
Location 5,111,816 – 5,111,908
Length 92
Max. P 0.794363
window3000

overview

Window 0

Location 5,111,816 – 5,111,908
Length 92
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 84.07
Mean single sequence MFE -16.42
Consensus MFE -14.02
Energy contribution -14.85
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.85
SVM decision value 0.60
SVM RNA-class probability 0.794363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5111816 92 - 22407834
CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAUACA-AC--------AAUCCAACAAUCCAACUAUCGAACAUC--
...(((.(((..(((((((((((..........))))))))))).))))))............-..--------...........................-- ( -17.80)
>DroSec_CAF1 12110 94 - 1
CCAGACACUUAAUUGCUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACA-AC--------AAUCCAACAAUCCAACUAUCGAACAUCCC
...(((.(((....((((((((((.....)))))))..)))....))))))............-..--------............................. ( -12.50)
>DroSim_CAF1 11941 94 - 1
CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACA-GC--------AAUCCAACAAUCCAACUAUCGAACAUCCC
...(((.(((..(((((((((((..........))))))))))).))))))............-..--------............................. ( -17.80)
>DroEre_CAF1 13045 100 - 1
CCAGACAGCUAAUUGGUUGUUGUGCUAAACAUAAUAACAGCCUAGGAGGUCACAUAAUAGACA-ACUAUUCAACAACCCAACAAUCCAACAAUCGAACAUC--
...(((..((....(((((((((..........)))))))))..))..)))....(((((...-.)))))...............................-- ( -15.90)
>DroYak_CAF1 12134 100 - 1
CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCUAGGAGGUCACAUAAUAGACA-ACAAUUCAACAAUUCAACAAUCCAACAAUCGAACAUC--
...(((.(((....(((((((((..........)))))))))...))))))............-.....................................-- ( -16.70)
>DroAna_CAF1 15324 77 - 1
CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACACAC--------CAUCCACCAAC------------------
...(((.(((..(((((((((((..........))))))))))).))))))...............--------...........------------------ ( -17.80)
>consensus
CCAGACACUUAAUUGGUUGUUGUGCUUAACAUAAUAACAGCCGAGGAGGUCACAUAAUAGACA_AC________AAUCCAACAAUCCAACUAUCGAACAUC__
...(((.(((...((((((((((..........))))))))))..)))))).................................................... (-14.02 = -14.85 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:14 2006