| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,109,642 – 5,109,741 |
| Length | 99 |
| Max. P | 0.714395 |
| Location | 5,109,642 – 5,109,741 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.81 |
| Mean single sequence MFE | -47.17 |
| Consensus MFE | -28.24 |
| Energy contribution | -28.05 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5109642 99 - 22407834 ACCUCCACACGACGCGG------------------C---GGAGUUGUGUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAAGCCACGUUGCCUCUCCUGG .........(((((.((------------------(---((((..(((.((((.((((((.(((......)))))))))))))))))))))))..(((...))).)))))((......)) ( -43.30) >DroSec_CAF1 9935 99 - 1 ACUUCCACGCGACGCGG------------------C---GGAGUUGUUUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUAGCUGCCUCCGCCUCGGCCAAGCCACGUUGCCUUUCCUGU ........((((((.((------------------(---((((......((.((((((((.(((......)))))))))..)).)))))))))..(((...))).))))))......... ( -42.20) >DroWil_CAF1 15341 102 - 1 ACUUCUACGCGACGCGG------------------CGACGGUGUGGCAUGACGCAAGUGGACCUGCUGGAAGGCUAAUUUGGCUGCCUCUGCUUCCGCCAAGCCACGCUGUCGCUCCUCC .......(((...)))(------------------((((((((((((.((.((.(((..((((....))..(((..........)))))..))).)).)).)))))))))))))...... ( -44.00) >DroYak_CAF1 9921 99 - 1 ACCUCCACACGGCGCGG------------------C---GGAGUGGUGUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCCGCCAUGCCACGUUGCCUCUCCUGG ..........((((.((------------------(---(((((((.((((((.((((((.(((......))))))))))))).))..))).))))))).))))......((......)) ( -47.90) >DroAna_CAF1 13118 99 - 1 ACUUCCACGCGGCGCGG------------------C---GGAGUCGUGUGCCGGAGCUGGACUUGCUGGAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAAGCCCCGCUGCCUCUCCUGU ........((((((.((------------------(---((((..(((.((((.((((((.(((......)))))))))))))))))))))))..(((...))).))))))......... ( -45.00) >DroPer_CAF1 13689 117 - 1 ACCUCCACCAGACGCGGCAGCGACGACGGCGGUGGG---GGCGUGGUGUGCCGCAGUUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAGACCGCGCUGUCGCUCCAAA ..........((.(((((((((....(((((((.((---((((.((((.((((.((((((.(((......)))))))))))))))))..)))))).))).).)))))))))))))).... ( -60.60) >consensus ACCUCCACGCGACGCGG__________________C___GGAGUGGUGUGCCGCAGCUGGACCUGCUGAAAGGCCAGCUUGGCUGCCUCCGCCUCGGCCAAGCCACGCUGCCUCUCCUGG ..........((((((.......................((((..(((.((((.((((((.(((......))))))))))))))))))))((....)).......))).)))........ (-28.24 = -28.05 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:13 2006