Locus 1860

Sequence ID 2L_DroMel_CAF1
Location 5,109,082 – 5,109,198
Length 116
Max. P 0.581959
window2998

overview

Window 8

Location 5,109,082 – 5,109,198
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.05
Mean single sequence MFE -32.17
Consensus MFE -19.99
Energy contribution -20.50
Covariance contribution 0.51
Combinations/Pair 1.33
Mean z-score -1.88
Structure conservation index 0.62
SVM decision value 0.10
SVM RNA-class probability 0.581959
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5109082 116 - 22407834
-UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCCACUAUCAGCCAUAAUAGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC
-..((((((((..(((((((......)))))))(((.---...)))....)))))))).((((.........))))...((((...(.(((......))).)...))))........... ( -32.10)
>DroSec_CAF1 9372 116 - 1
-UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCUACUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC
-..((((((((..(((((((......)))))))((((---.....)))).)))))))).((((.(((((.((.......)).....)))))))))........(((....)))....... ( -30.90)
>DroEre_CAF1 10283 116 - 1
-UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCCACUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC
-..((((((((..(((((((......)))))))(((.---...)))....)))))))).((((.(((((.((.......)).....)))))))))........(((....)))....... ( -32.40)
>DroWil_CAF1 14749 113 - 1
AUCUAUGGU---UGGAUCCUUAUGUUUG---CCUGGAUCAUCUGUGCUAUCAGCCAUGAUAGCAUUGAAUUUCUUAUUUGAUUCGUUUUAGAACAAAAUGUCAUUUGGUUUGAGUUUCU-
.........---.(((..((((.....(---((..(((..((.(((((((((....))))))))).))........((((.(((......)))))))..)))....))).))))..)))- ( -24.70)
>DroYak_CAF1 9346 116 - 1
-UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU---CCUCCAGUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC
-..((((((((..(((((((......)))))))(((.---...)))....)))))))).((((.(((((.((.......)).....)))))))))........(((....)))....... ( -32.70)
>DroAna_CAF1 12576 116 - 1
-UCUAUGAUUGUUGGAUCCCCUGGCUUGGAUCCUGGA---UCUCCGCUAUCAGCCAUGAUGGCAUUGGUUUCGCUAAUUGCCCUUGGUUAAGCCAAAUGGUCAUCGGUUAUGGGUUUGCC
-((((((((((..((((((........))))))..((---((...(((((((....))))))).(((((((.(((((......))))).)))))))..))))..))))))))))...... ( -40.20)
>consensus
_UCUAUGGUUGUUGGAUCCAUGUGCUUGGAUCCUGGU___CCUCCACUAUCAGCCAUAAUGGCAUUGAUUUCGCUAAUAGACCCUCGUCAAGCCAAAUUGUCAUCGGUCACGAGUUUUUC
...((((((((..(((((((......)))))))(((.......)))....)))))))).((((.(((((.................)))))))))........(((....)))....... (-19.99 = -20.50 +   0.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:12 2006