Locus 186

Sequence ID 2L_DroMel_CAF1
Location 570,877 – 570,997
Length 120
Max. P 0.508061
window277

overview

Window 7

Location 570,877 – 570,997
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.56
Mean single sequence MFE -48.47
Consensus MFE -42.64
Energy contribution -43.20
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.88
SVM decision value -0.05
SVM RNA-class probability 0.508061
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 570877 120 + 22407834
GCAGCCACUCCGUACGGCAUUGAAUCCUUCGAUUCCGUGCUAAAGCCGCUUUGGAAGGGUAUUCGCACGCAUCGCGGCAAAGGUCUGGCCGCCUUCCUCAAGGCUAUUGGCUAUUUGAUU
..(((((....((((((.(((((.....))))).))))))...((((.....((((((......((.(((...)))))...((.....)).))))))....))))..)))))........ ( -43.60)
>DroPse_CAF1 11255 120 + 1
GCUGCCACGCCCUACGGCAUUGAGUCGUUCGAUUCGGUGCUGAAGCCCCUGUGGAAGGGCAUCCGCACGCAUCGCGGCAAGGGACUGGCCGCCUUCCUGAAGGCCAUUGGCUACCUGAUU
(((((((..((((.((((((((((((....))))))))))))..((((........))))..((((.......))))..))))..)))).(((((....)))))....)))......... ( -50.90)
>DroPer_CAF1 11239 120 + 1
GCUGCCACGCCCUACGGCAUUGAGUCGUUCGAUUCGGUGCUGAAGCCCCUGUGGAAGGGCAUCCGCACGCAUCGCGGCAAGGGACUGGCCGCCUUCCUGAAGGCCAUUGGCUACCUGAUU
(((((((..((((.((((((((((((....))))))))))))..((((........))))..((((.......))))..))))..)))).(((((....)))))....)))......... ( -50.90)
>consensus
GCUGCCACGCCCUACGGCAUUGAGUCGUUCGAUUCGGUGCUGAAGCCCCUGUGGAAGGGCAUCCGCACGCAUCGCGGCAAGGGACUGGCCGCCUUCCUGAAGGCCAUUGGCUACCUGAUU
((.((((..((((.((((((((((((....))))))))))))..(((.((.....)))))....((.(((...))))).))))..)))).(((((....))))).....))......... (-42.64 = -43.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:41 2006