| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,104,165 – 5,104,259 |
| Length | 94 |
| Max. P | 0.520757 |
| Location | 5,104,165 – 5,104,259 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 82.80 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -10.81 |
| Energy contribution | -11.17 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5104165 94 - 22407834 AACUUAUAUUCCGUUUCCAUUGGGGCGACAGCAUUAUGUCAUUACCUUUUUGGCC-CAUCGCACCUAAGCCACUAAAAUGAACU-AAAAUGGCCCA- ......................((((((((......))))..........((((.-............))))............-......)))).- ( -16.42) >DroSec_CAF1 4528 83 - 1 AACUUAUAUUCCGUUUCCAUUUGGGCGACAGCAUUAUGUCAUUACCUU-UUGGCC-AAUCGCACCUAAGACACCA-----------AAAUGGCCCA- .....................(((((((((......))))....(.((-((((..-..((........))..)))-----------))).))))))- ( -17.40) >DroSim_CAF1 4503 83 - 1 AACUUAUAUUCCGUUUCCAUUUGGGCGACAGCAUUAUGUCAUUACCUU-UUGGCC-CAUCGCACCUAGGACACCA-----------AAAUGGCCCA- .....................(((((((((......))))....(((.-...((.-....))....)))......-----------.....)))))- ( -17.80) >DroEre_CAF1 4590 83 - 1 AACUUAUAUUCCGUUUCCAUUUUGGCGACAACAUUAUGUCAUUACCUU-UUGGCC-CAUCGCACCUAAGGCACCA-----------AAAUGGCCUA- ................(((((((((.((((......))))....((((-...((.-....))....))))..)))-----------))))))....- ( -19.30) >DroYak_CAF1 4496 84 - 1 AACUUAUAUUCCGUUUCCAUUUCGGCGACAACAUUAUGUCAUUACCUU-UUGGCCACAUCGCACCUAAGGCACUG-----------AAAUGGCCCA- ................(((((((((.((((......))))....((((-...((......))....))))..)))-----------))))))....- ( -19.10) >DroAna_CAF1 7664 93 - 1 AAUUUAUAUUCAGUAUCCAUUUUGGCGACAACAUUAUGUCAUUACCUU--UGACU-GAGAGCACCUAAACC-CAAAAAGAAACUGAAAAUAGCCAAC ...((((.((((((.((..((((((.((((......)))).....(((--.....-)))...........)-))))).)).)))))).))))..... ( -16.80) >consensus AACUUAUAUUCCGUUUCCAUUUGGGCGACAACAUUAUGUCAUUACCUU_UUGGCC_CAUCGCACCUAAGACACCA___________AAAUGGCCCA_ ......................((((((((......)))).....(((....((......))....)))......................)))).. (-10.81 = -11.17 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006