Locus 1858

Sequence ID 2L_DroMel_CAF1
Location 5,103,985 – 5,104,095
Length 110
Max. P 0.880218
window2996

overview

Window 6

Location 5,103,985 – 5,104,095
Length 110
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 74.53
Mean single sequence MFE -34.70
Consensus MFE -15.80
Energy contribution -16.28
Covariance contribution 0.48
Combinations/Pair 1.19
Mean z-score -2.00
Structure conservation index 0.46
SVM decision value 0.91
SVM RNA-class probability 0.880218
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5103985 110 - 22407834
GUCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUACGGCGGAUUCCGAUGAUUCGAAAGAUUCGGAGG---------AUGCGGGUGAUGCGGAGGAGAAGGGAGUGGAACUGU
.((((((..(..(((.((....))....)))..((((....(.(((..((((((....((....)).)))))).---------.))).)....))))........)..))))))..... ( -35.60)
>DroSec_CAF1 4368 102 - 1
GCCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUGCGGUGGAUUCUGAUGAAUCGAAAGAUUCGGAGU---------AUGCGGGUGCUGCGGAGGAGGAGGGGGU--------
.(((.((((((((((.((..(((((.(((.((.(((....))).)).))))))))(((((....))))).....---------...))..)))).))))))))).......-------- ( -33.00)
>DroSim_CAF1 4343 102 - 1
GUCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUGCGGUGGAUUCCGAUGAAUCGAAAGAUUCGGAGG---------AUGCGGGUGCUGCGGAGGAGGAGGGGGU--------
.(((.((((((((((.((.((((.(((((.((.(((....))).)).)))))..((((((....))))))...)---------)))))..)))).)))))).)))......-------- ( -35.10)
>DroEre_CAF1 4406 115 - 1
GUCUACUUUCGAGCGAUGAUGUCAGGAGUCCUAUGCGGAUACGGCGGAUUUCGAUGAUUCGGAUGAUUCGGAUGAUACGGGGGAUGCGGGUGCCGCGGAUGACGGGGGAG----ACGUG
((((.((..(....(((...))).(..((((...((((...(.(((..(..((((.(((((((...))))))).)).))..)..))).)...))))))))..))..))))----))... ( -40.40)
>DroYak_CAF1 4341 85 - 1
GUCUACUUUCGAGCGAUGAUGUCAGGAGUCCGAUGCGGAUGCGACGGAUUCCGAUGAUUCGGUUGAUUGGGAGGA------------------------------GGAAA----ACUUG
.(((.((..(((.((((...((((((((((((.(((....))).))))))))..))))...)))).)))..))..------------------------------)))..----..... ( -29.40)
>consensus
GUCUACUUUCGAGCGAUGAUGUCAGGAGUGCGAUGCGGAUGCGGCGGAUUCCGAUGAUUCGAAAGAUUCGGAGG_________AUGCGGGUGCUGCGGAGGAGGAGGGAGU___AC___
.(((.(((((((((..(((.(((.(((((.((.(((....))).)).))))))))...)))...).))))))))..........((((.....))))........)))........... (-15.80 = -16.28 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006