Locus 1857

Sequence ID 2L_DroMel_CAF1
Location 5,100,954 – 5,101,054
Length 100
Max. P 0.746768
window2995

overview

Window 5

Location 5,100,954 – 5,101,054
Length 100
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 93.44
Mean single sequence MFE -27.37
Consensus MFE -20.60
Energy contribution -20.63
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -3.46
Structure conservation index 0.75
SVM decision value 0.46
SVM RNA-class probability 0.746768
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5100954 100 + 22407834
AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCUAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG
.((((((((((----(((((((....))))))))).....(((((.(..(((...((((((...-....)))))).....)))..).)))))..))))))))... ( -29.70)
>DroSec_CAF1 1346 100 + 1
AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG
.((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.-...)).)))).....)))..).)))))..))))))))... ( -27.10)
>DroSim_CAF1 1340 100 + 1
AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG
.((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.-...)).)))).....)))..).)))))..))))))))... ( -27.10)
>DroEre_CAF1 1342 101 + 1
AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGAAAUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG
.((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.....)).)))).....)))..).)))))..))))))))... ( -27.10)
>DroYak_CAF1 1309 100 + 1
AUACACGCCUC----UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA-AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG
.((((((((((----(((((((....))))))))).....(((((.(..(((...((((..((.-...)).)))).....)))..).)))))..))))))))... ( -27.10)
>DroAna_CAF1 4672 103 + 1
AUACACGUCUAUCUAUAUAUAUCUGAAUAUAUAGAAAUUGA-AUUGGAAUUGUUCGCGCAAAGA-AUUGUAGCGUGAAAUCAAAGCAAAUCUGCGGUGUGUAAUC
.(((((..(..(((((((((......)))))))))..(((.-.((((.....(((((((.....-......))))))).))))..)))......)..)))))... ( -26.10)
>consensus
AUACACGCCUC____UAUAUAUACGCAUAUAUAGAAAUUGAAAUUGGAAUUGUUCGCGCAAAGA_AUACUGGCGUAAAAUCAAAGCGAAUUUACGGUGUGUAAUG
.((((((((......(((((((....))))))).......(((((.(..(((...((((............)))).....)))..).)))))..))))))))... (-20.60 = -20.63 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:09 2006