Locus 1855

Sequence ID 2L_DroMel_CAF1
Location 5,091,249 – 5,091,369
Length 120
Max. P 0.552401
window2990

overview

Window 0

Location 5,091,249 – 5,091,369
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -34.20
Consensus MFE -32.02
Energy contribution -32.47
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.61
Structure conservation index 0.94
SVM decision value 0.04
SVM RNA-class probability 0.552401
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5091249 120 + 22407834
CUAGACAAUUACGAUAGAGUAAAACCAGCUUUACUACGGGGAAAUCUUUUUCUUGUACAGCAUCUGCAGUUUCUUCUUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA
(((.((..((((......)))).(((.((...((((((((((((....)))))....((((...(((((........))))).))))..........))))))).)).))))).)))... ( -29.30)
>DroSim_CAF1 23188 120 + 1
CUAGACAAUUACGAUAGAGUAAAACCCGCUUUACUACGGGGAAAUCUUUUUCUUGUACAGCAUCUGCAGCUUCUUCUUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA
........((((......)))).((((((.....(((((((((.....)))))))))..((((((((((((.(....((((..((.....)).))))..).)))))))))))))))))). ( -36.20)
>DroYak_CAF1 22269 119 + 1
CUAGACAAUUACGAUAGAGUAAAACCCGCUUUACUACGGGGAAAUCUU-UUCUUGUACAGCAUCUGCAGCUUCUUCAUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA
........((((......)))).((((((.....(((((((((....)-))))))))..((((((((((((....((((((..((.....)).)))).)).)))))))))))))))))). ( -37.10)
>consensus
CUAGACAAUUACGAUAGAGUAAAACCCGCUUUACUACGGGGAAAUCUUUUUCUUGUACAGCAUCUGCAGCUUCUUCUUUGUACGCUGCCAGCCAUAACUGUAGUUGCAGGUGUGUGGGUA
........((((......)))).((((((.....(((((((((.....)))))))))..((((((((((((.(....((((..((.....)).))))..).)))))))))))))))))). (-32.02 = -32.47 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:04 2006