| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,090,558 – 5,090,659 |
| Length | 101 |
| Max. P | 0.695280 |
| Location | 5,090,558 – 5,090,659 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 85.22 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.94 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5090558 101 + 22407834 CACCCAUGUAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCUAAAACCACUCUAAAGAUGACCCCGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU ....(((.(((((....))))).))).(((........)))............((((((....))))))...(((((((((((....))).)))))))).. ( -18.30) >DroSec_CAF1 19910 89 + 1 CACCCAA-CAUAUGAUUCUUUCAAUGAAGAUUACCAUUUCGAAAACCACUC-----------CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU .......-(((.(((.....))))))..............((((((.....-----------..))))))..(((((((((((....))).)))))))).. ( -19.50) >DroSim_CAF1 22511 89 + 1 CACCCCA-GAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCGAAAACCACUC-----------CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU .......-((((((...((((......))))...))))))((((((.....-----------..))))))..(((((((((((....))).)))))))).. ( -23.30) >consensus CACCCAA_CAAAUGAUUGUUUAAAUGAAGAUUCCCAUUUCGAAAACCACUC___________CUGUUUUCUCGCGGUGCAGUUACCCAACAUGCGCUGCUU ........................................((((((..................))))))..(((((((((((....))).)))))))).. (-14.60 = -14.94 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:03 2006