Locus 1852

Sequence ID 2L_DroMel_CAF1
Location 5,089,296 – 5,089,408
Length 112
Max. P 0.636911
window2985

overview

Window 5

Location 5,089,296 – 5,089,408
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.63
Mean single sequence MFE -27.65
Consensus MFE -25.24
Energy contribution -25.55
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.91
SVM decision value 0.21
SVM RNA-class probability 0.636911
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5089296 112 - 22407834
AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCUGGAAAUUUAUGAGCCAUGCCCCCCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAAC--CCGACCCAAUCU------
......(((.((((.(((((...((((....))))...))))).)))))))............((((((..(((....)))..((.((.....))))...--.)))))).....------ ( -28.90)
>DroSec_CAF1 18669 111 - 1
AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCGGGAAAUUUAUGAGCCAUGCCC-CCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAGC--CCGACCCAAUCU------
......(((.((((.(((((...((((....))))...))))).))))))).......-....((((((...((....))((.((.((.....)))).))--.)))))).....------ ( -29.00)
>DroSim_CAF1 21284 111 - 1
AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCUGGAAAUUUAUGAGCCAUGCCC-CCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAGC--CCGACCCAAUCU------
......(((.((((.(((((...((((....))))...))))).))))))).......-....((((((...((....))((.((.((.....)))).))--.)))))).....------ ( -29.00)
>DroYak_CAF1 20284 118 - 1
AAUUAUGCUGCAUAUAUUUCAUACAGCAAUAGCAGCAGGAAAUUUAUGAGCCAUGCCC--CCAGGGUCGAACUUGACAAAGCCCCACCGAACAGUGCACCCCCCGACCCAAUCUCCCAUC
......(((.((((.(((((.....((....)).....))))).))))))).......--...((((((..(((....)))...(((......))).......))))))........... ( -23.70)
>consensus
AAUUAUGCUGCAUAUAUUUCAUAUUGCAAUAGCAGCUGGAAAUUUAUGAGCCAUGCCC_CCCAGGGUCGAACUUGACAAAGCCCCAGCGAAAAGCGGAGC__CCGACCCAAUCU______
......(((.((((.(((((...((((....))))...))))).)))))))............((((((..(((....))).....((.....))........))))))........... (-25.24 = -25.55 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:00 2006