Locus 185

Sequence ID 2L_DroMel_CAF1
Location 570,045 – 570,165
Length 120
Max. P 0.607385
window276

overview

Window 6

Location 570,045 – 570,165
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -39.99
Consensus MFE -34.11
Energy contribution -33.34
Covariance contribution -0.77
Combinations/Pair 1.16
Mean z-score -2.02
Structure conservation index 0.85
SVM decision value 0.15
SVM RNA-class probability 0.607385
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 570045 120 - 22407834
UUGUCAAAAUAUUGCGCAUCCUCUGGUUUCAUGAAGGGGAGAUUUUGCCCCUUUGGUUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACUUGGAUGAAGAAACCGGCUGGGGUGCCA
............((.(((((((((((((((..(((((((........)))))))......(((((((.......((((....)))).......))))))).))))))))..))))))))) ( -43.04)
>DroPse_CAF1 10423 120 - 1
UUGUCAAAAUACUGUGCAUCCUCUGGCUUCAUGAAGGGCAGAUUCUGCCCCUUUGGUUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACCUGGAUGAAGAAGCCCGCCGGCGUGCCA
.............(.((((...(((((((((((..((((((...))))))....(((.....)))))))))...(((.(((((((((.......)))).)))))))).))))).))))). ( -38.30)
>DroPer_CAF1 10407 120 - 1
UUGUCAAAAUACUGUGCAUCCUCUGGCUUCAUGAAGGGCAGAUUCUGCCCCUUUGGCUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACCUGGAUGAAGAAGCCCGCCGGCGUGCCA
.............(.((((...(((((........((((((...))))))....((((..(((((((.......((((....)))).......)))))))...)))).))))).))))). ( -38.64)
>consensus
UUGUCAAAAUACUGUGCAUCCUCUGGCUUCAUGAAGGGCAGAUUCUGCCCCUUUGGUUGGUUAUCCAUGAAUUUGGCAUUCUUGUCCUCCACCUGGAUGAAGAAGCCCGCCGGCGUGCCA
............((.((((...(((((........((((((...))))))....((((..(((((((.......((((....)))).......)))))))...)))).))))).)))))) (-34.11 = -33.34 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:40 2006