Locus 1848

Sequence ID 2L_DroMel_CAF1
Location 5,087,637 – 5,087,731
Length 94
Max. P 0.816145
window2975

overview

Window 5

Location 5,087,637 – 5,087,731
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 97.87
Mean single sequence MFE -31.58
Consensus MFE -31.19
Energy contribution -31.25
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -1.87
Structure conservation index 0.99
SVM decision value 0.66
SVM RNA-class probability 0.816145
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5087637 94 - 22407834
CCGACGAUGACUCAGAAAUUCUUUGGCAUAAUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU
...(((((..((((.....((((..(.....((.(((((((.(((...(((......))).))).))))))))).)..))))...))))))))) ( -28.30)
>DroSec_CAF1 17046 94 - 1
CCGACGAUGACUCAGAAAUUCUUUGGCAUAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAGGAUUAUGAGGUUGU
...(((((..((((..(((((((......((((.(((((((.(((...(((......))).))).))))))))))).))))))).))))))))) ( -33.90)
>DroSim_CAF1 19657 94 - 1
CCGACGAUGACUCAGAAAUUCUUUGGCAUAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU
...(((((..((((.....((((..(....(((.(((((((.(((...(((......))).))).)))))))))))..))))...))))))))) ( -32.10)
>DroYak_CAF1 18579 94 - 1
CCCACGAUGACUCAGAAAUUCUUUGGCACAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU
...(((((..((((.....((((..(....(((.(((((((.(((...(((......))).))).)))))))))))..))))...))))))))) ( -32.00)
>consensus
CCGACGAUGACUCAGAAAUUCUUUGGCAUAGUGUGGCGCUGGCACUUUGCAUUAGUUUGUUGUGGUGGCGCCCGCUUGAAGAUUAUGAGGUUGU
...(((((..((((.....((((..(....(((.(((((((.(((...(((......))).))).)))))))))))..))))...))))))))) (-31.19 = -31.25 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:50 2006