Locus 1846

Sequence ID 2L_DroMel_CAF1
Location 5,085,868 – 5,085,986
Length 118
Max. P 0.929144
window2970

overview

Window 0

Location 5,085,868 – 5,085,986
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.10
Mean single sequence MFE -34.38
Consensus MFE -24.02
Energy contribution -24.02
Covariance contribution 0.00
Combinations/Pair 1.13
Mean z-score -3.18
Structure conservation index 0.70
SVM decision value 1.20
SVM RNA-class probability 0.929144
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5085868 118 + 22407834
UAGAAUGAAGAAAAAAGAUUCCGUCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG--GGGCGUUUAGAAAGUAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU
...................(((.((.(((((....)))))))...)))......(((.((((--((.(((((((...(((....))).))))))).)))))).)))(((.......))). ( -36.10)
>DroSec_CAF1 15348 103 + 1
---------------AUAUUCCUCCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG--GGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU
---------------....(((((..(((((....)))))...)))))......(((.((((--((.(((((....((((......))))))))).)))))).)))(((.......))). ( -34.40)
>DroSim_CAF1 17923 118 + 1
UAGAAUGAAGCAAAAAGAUUCCUCCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG--GGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU
.........(((((.....(((((..(((((....)))))...)))))..........((((--((.(((((....((((......))))))))).)))))).)))))..(((....))) ( -37.30)
>DroYak_CAF1 16776 120 + 1
UGGCAUGAAGACAAAAGAUUCCACUGUGUUAAAUGUAGCAGAAGAGGAUAAGAAGGGGGCGGGGGGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCAGCGUUUGCAUAGCAAUUGCU
.((((..............(((.((.(((((....)))))..)).)))......(.(((((..(((.(((((....((((......))))))))).)))..))))).)........)))) ( -29.70)
>consensus
UAGAAUGAAGAAAAAAGAUUCCUCCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG__GGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU
...................(((((..(((((....)))))...)))))......(((.(((...((((((((....((((......))))))))).)))))).)))(((.......))). (-24.02 = -24.02 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:45 2006