| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,082,164 – 5,082,267 |
| Length | 103 |
| Max. P | 0.566657 |
| Location | 5,082,164 – 5,082,267 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 88.03 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -21.02 |
| Energy contribution | -22.10 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5082164 103 - 22407834 GGCACAGCAACACUACUCAGCAGUAGUGAGUCAAGAGUUUUCCAGCAAAUUACUGCUGAGAACUGCGAAACUUCAAUGAACUGCAUGCCAUUAUCAGAUUGGA ((((..(((.(((((((....)))))))(((...((((((((.((((......))))))))))).)...))).........))).)))).............. ( -28.80) >DroSec_CAF1 11577 103 - 1 GGCACAGCAACACUACUCAGCAGCAGUGAGUCAAGAGUUUUCCAGCAAAUUACUGCUGAGAACUGCGAAACUUCAAUCAACUGCCAGCCAUUAUCAGAUUGGA (((...((...........)).(((((((((...((((((((.((((......))))))))))).)...))))......)))))..))).............. ( -24.40) >DroSim_CAF1 13828 88 - 1 GGCACAGCAACA---------------GAGUCAAGAGUUUUCCAGCAAAUUACUGCUGAGAACUGCGAAACUUCAAUCAACUGCCAGCCAUUAUCAGAUUGGA ((((........---------------((((...((((((((.((((......))))))))))).)...))))........))))..(((.........))). ( -20.59) >consensus GGCACAGCAACACUACUCAGCAG_AGUGAGUCAAGAGUUUUCCAGCAAAUUACUGCUGAGAACUGCGAAACUUCAAUCAACUGCCAGCCAUUAUCAGAUUGGA (((...(((.(((((((....)))))))(((...((((((((.((((......))))))))))).)...))).........)))..))).............. (-21.02 = -22.10 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:36 2006