| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,073,879 – 5,073,999 |
| Length | 120 |
| Max. P | 0.943496 |
| Location | 5,073,879 – 5,073,999 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Mean single sequence MFE | -51.54 |
| Consensus MFE | -43.14 |
| Energy contribution | -43.28 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.943496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5073879 120 - 22407834 CAGUGCUUACAGCGUGCCACGCGGGACGAUGCCAAUACGCCGCUGCUGCGUCCCUGCAGCUACGGAAAGGGCCAGCAGUGGCUAAUGGAGUCCAAGUUCAAGUGGCAGGCUCACUAGCUG ....(((...(((.((((((...(((((((.(((.((.((((((((((.(.((((....(....)..))))))))))))))))).))).)))...))))..)))))).)))....))).. ( -58.00) >DroVir_CAF1 2941 120 - 1 CAGUGCUUGCAGCGUGCCACGCGAGAUGAUGCCAGCACGCCGCUGCUGCGGCCCUGCAACUAUUCCAAGGGGCAGCAGUGGCUGAUGGAGUCCAAGUUCAAGUGGCAGGCGCACUAGCUA ....((((((.((.((((((..(((..(((.(((.((.(((((((((((..((((............))))))))))))))))).))).)))....)))..)))))).)))))..))).. ( -58.10) >DroGri_CAF1 3130 120 - 1 CAGUGUUUGCAGCGUGCCACACGCGACGAUGCCAGCACGCCGCUGCUGAGGCCGUGCAACUAUGCCAAGGGGCAGCAGUGGCUCAUGGAGUCGAAAUUCAAGUGGCAGGCGCACUAGCUG ((((...(((.((.((((((...((((....(((....((((((((((...((..(((....)))...))..))))))))))...))).))))........)))))).)))))...)))) ( -54.50) >DroWil_CAF1 9999 120 - 1 CAGUGCUUACAGCGUGCCACACGAGAUGAUGCAAAUACGCCAUUAUUGCGACCCUGUGAUUAUAGCAAGGGUCAACAAUGGCUUAUGGAAUCGAAAUUCAAGUGGCAGGCCCACUAGCUG ((((.......((.((((((..(((.((((....(((.((((((.....((((((((.......)).))))))...)))))).)))...))))...)))..)))))).))......)))) ( -38.72) >DroMoj_CAF1 3502 120 - 1 CAGUGCUUGCAACGUGCCACGCGAGAUGAUGCAAGCACGCCGCUGCUGCGGCCCUGCAACUACUCCAAGGGACAGCAGUGGCUGAUGGAGUCCAAGUUCAAGUGGCAGGCGCACUAGCUA .(((((..((....((((((..(((..(((.(...((.((((((((((...((((............)))).))))))))))))...).)))....)))..)))))).)))))))..... ( -48.40) >DroPer_CAF1 7246 119 - 1 CAGUGCUUACAGCGUGCCAACAGAGAUGAUGCCAAUACGCCGCUGUUGCGGCCCUGCAGCUAUGGCAAGGGCCAGCAGUGGCUGAUGGAGUCCAAGUUCAAGUGGCAGGCACACUAGCA- ...((((....((.(((((...(((..(((.(((.((.(((((((((..((((((...((....)).))))))))))))))))).))).)))....)))...))))).)).....))))- ( -51.50) >consensus CAGUGCUUACAGCGUGCCACGCGAGAUGAUGCCAACACGCCGCUGCUGCGGCCCUGCAACUAUGCCAAGGGCCAGCAGUGGCUGAUGGAGUCCAAGUUCAAGUGGCAGGCGCACUAGCUG ....(((....((.((((((..(((..(((.(((.((.((((((((((...((((............)))).)))))))))))).))).)))....)))..)))))).)).....))).. (-43.14 = -43.28 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:28 2006