| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,061,044 – 5,061,145 |
| Length | 101 |
| Max. P | 0.572964 |
| Location | 5,061,044 – 5,061,145 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.88 |
| Mean single sequence MFE | -25.70 |
| Consensus MFE | -18.41 |
| Energy contribution | -18.49 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5061044 101 - 22407834 UCUCACUUAUCAACAAU---AACAAUUUUGUGGCUGUGUUUCGUUGGGUGAUAAGAGGGCAA--GUCAACAGCGAAAUACAAAAUCGACACAAAU---------AUGUCGGUCUC ............((((.---.......))))(((((((((((((((..((((..........--)))).))))))))))))....(((((.....---------.)))))))).. ( -25.80) >DroSec_CAF1 7988 113 - 1 UCUCACUUAUCAACAUUAACAACAAUUUCGUGGCUGUGUUUCGUUGGGUGAUAAGAGGGCAA--GUCAACAGCGAAAUACAAAAUCGACACAAAUACAAAUAGUAUGUCGGCCUC ...............................(((((((((((((((..((((..........--)))).))))))))))))....(((((....(((.....))))))))))).. ( -27.40) >DroSim_CAF1 8277 104 - 1 UCUCACUUAUCAACAUUAGCAACAAUUUCGUGUCUGUGUUUCGUUGGGUGAUAAGAGGGCAA--GUCAACAGCGAAAUACAAAAUCGACACAAAU---------AUGUCGGCCUC ..................((.(((((((.(((((((((((((((((..((((..........--)))).)))))))))))).....)))))))))---------.)))..))... ( -26.20) >DroEre_CAF1 8356 101 - 1 GCUCACUUAUCAACUUU---AACAAUUUUGUGGCUGUAUUUCGUUGGGUGAUAAGAGGGCAA--GUCAACAGCGAAAUACAAAAUCGACACAAAU---------AUGUCGGCCUC .................---...........(((((((((((((((..((((..........--)))).))))))))))))....(((((.....---------.)))))))).. ( -27.30) >DroYak_CAF1 8138 101 - 1 UCUCACUUAUCAACAUU---AACAAUUUUGUGGCUGUGUUUCGCUGGGUGAUAAGAGGGCAA--GUCAACAGCGAAAUACAAAAUCGACACAAAU---------AUGUCGGCCUC .................---...........(((((((((((((((..((((..........--)))).))))))))))))....(((((.....---------.)))))))).. ( -29.70) >DroAna_CAF1 6500 99 - 1 UCUCACUUAUCAACAAA--AAACAAUUUAGUGCCUGUGUUUCGGUU-CUGAUAAGAGCACAACCAUCGACACUGAAC-GUGAAAU---AACAAAA---------GUGCCUGUCUC ...(((((.........--......(((((((.(.(((.....(((-((....))))).....))).).))))))).-((.....---.))..))---------)))........ ( -17.80) >consensus UCUCACUUAUCAACAUU___AACAAUUUUGUGGCUGUGUUUCGUUGGGUGAUAAGAGGGCAA__GUCAACAGCGAAAUACAAAAUCGACACAAAU_________AUGUCGGCCUC ...............................(((((((((((((((..((((............)))).))))))))))))....(((((...............)))))))).. (-18.41 = -18.49 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:15 2006