Locus 1829

Sequence ID 2L_DroMel_CAF1
Location 5,056,181 – 5,056,299
Length 118
Max. P 0.960616
window2936

overview

Window 6

Location 5,056,181 – 5,056,299
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 70.69
Mean single sequence MFE -23.98
Consensus MFE -14.36
Energy contribution -15.55
Covariance contribution 1.19
Combinations/Pair 1.20
Mean z-score -1.87
Structure conservation index 0.60
SVM decision value 1.52
SVM RNA-class probability 0.960616
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5056181 118 - 22407834
UCAACUGCUUGGCUCCAGGGGAGCAGCUCACCACCACACAGAAAUCUACAUAGUUUAAAGAUACUUUUCAUUCCAGUACAUGCUAGAUAUACAUAUGUACUAGAAUAACGAAAAAUGA
......(((..(((((...)))))))).....................(((..(((...((......))((((.((((((((...........)))))))).))))...)))..))). ( -19.60)
>DroSec_CAF1 3278 114 - 1
UCAACUGCUUGGCUCCAUGGGAGCAGCUCACCACCACCCAGCAAUGUACAUAGUUAUAAGAUACUUUUUAUUCCAGUACAUGCUAGAUA----UAUGUACUGGGAUAACGACAAAUGA
..(((((....(((((...))))).(((...........)))........)))))............(((((((((((((((.......----))))))))))))))).......... ( -28.40)
>DroSim_CAF1 3224 107 - 1
UCAACUGCUUGGCUCCACGGGAGCAGCUCACCACCAACCAGCAAUCUACAUAGUUAUAGAAUACUUUUCAUUCCAAUACAUGCUAGAUA----UAUGUACAGGGAUAACGA-------
..(((((....(((((...))))).(((...........)))........)))))...(((.....)))(((((..((((((.......----))))))..))))).....------- ( -19.00)
>DroYak_CAF1 3298 95 - 1
UCAACUGUUUGGCUCCGGAACAGGAGCUC------------------AAAUAGUAUUAGGUCAUUCUUCGACCAAGUACAUGCCC-ACA----UAUGUAUUAGAACAACAACAAAUUA
...(((((((((((((......))))).)------------------)))))))....((((.......)))).((((((((...-...----))))))))................. ( -28.90)
>consensus
UCAACUGCUUGGCUCCAGGGGAGCAGCUCACCACCACCCAGCAAUCUACAUAGUUAUAAGAUACUUUUCAUUCCAGUACAUGCUAGAUA____UAUGUACUAGAAUAACGACAAAUGA
......(((..((((.....)))))))..........................................(((((((((((((...........)))))))))))))............ (-14.36 = -15.55 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:13 2006