| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,048,518 – 5,048,637 |
| Length | 119 |
| Max. P | 0.594643 |
| Location | 5,048,518 – 5,048,637 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 82.46 |
| Mean single sequence MFE | -44.77 |
| Consensus MFE | -31.78 |
| Energy contribution | -30.82 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5048518 119 + 22407834 UGGGAAGAUACCUUUCCUGCACCUCCGGCCGCGUUUGCAGGCAUCUCAGGAGACUCCGACGAAUCUCCAGGCGAGCGAGAGACUGCAAGGAGCGUGGCUGGGUGCCAAGCAAACACAUU .((((((....)))))).(((((..(((((((((((((((...((((.(((((.((....)).)))))..(....)))))..))))))...)))))))))))))).............. ( -50.70) >DroSec_CAF1 1947 119 + 1 UAGGAAGAUAUCUUUCCUGCACCUCCGGCCUCGUUUGCAGGCAUCUCAGGAUACUCCGACGAAUCUCCAGGCGAGCGAUGGUCUGCAAGGAGCGUGGCUGGGUGCCAAACAAACACAUU .((((((.....))))))(((((..(((((.((((((((((((((...((.....)).......(((.....))).))).))))))))...))).)))))))))).............. ( -40.10) >DroSim_CAF1 1792 119 + 1 UGGGAAGAUAUCUUUCCUGCACCUCCGGCCGCGUUUGCAGGCAUCUCAGGAUACUCCGACGAAUCUCCAGGCGAGCGAUGGUCUGCAAGGAGCGUGGCUGGGUGCCAAACAAACACAUU .((((((....)))))).(((((..((((((((((((((((((((...((.....)).......(((.....))).))).))))))))...)))))))))))))).............. ( -45.90) >DroEre_CAF1 1927 119 + 1 UGGGGCGAUACUUUUCCUGCACCUCCAGCCGCGUUCGCAGGGAUCUCAGGAGACACCGACGAAUUUCCAGGCGAGCGAGGGACUGCAAGGAGCGUGGCUGGGUGCCAAACAAACGCAUU ....(((...........(((((..(((((((((((((((...((((.(((((..........)))))..(....)))))..))))...))))))))))))))))........)))... ( -42.31) >DroYak_CAF1 1932 119 + 1 UGGGGCAAUACAUGUCCUGCACCUCCGGCCGCGUUCGCAGAGAUCUCAGGAGACUACGACGAAUCUCCAGGCGAGCGAGUGACUGCAAGGAGCGGGGCUGGGUGCCAAACAAACACAUU ((.((((...((.(((((((.(((.(((((.(((((((.((((((((((....))..)).).)))))...))))))).).).)))..))).)))))))))..))))...))........ ( -47.20) >DroAna_CAF1 2007 119 + 1 UUGGGAGGUACUUCUGCAGAAUAUCCGGACGAGUUUGGAGUGUUUUCAGGAUUUUCCGGCGAAUCACCAGCCGUGCGACGGACUGUAAAGUCCUCGGCUGGGUUCCUAGAACUGUCAUU ...(((((...(((((.((((((((((((....)))))).))))))))))).)))))((((.....(((((((......(((((....))))).)))))))((((...))))))))... ( -42.40) >consensus UGGGAAGAUACCUUUCCUGCACCUCCGGCCGCGUUUGCAGGCAUCUCAGGAGACUCCGACGAAUCUCCAGGCGAGCGAGGGACUGCAAGGAGCGUGGCUGGGUGCCAAACAAACACAUU .((((((.....))))))((((..((((((((((((((((........((.....))..((...(((.....))))).....))))...)))))))))))))))).............. (-31.78 = -30.82 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:12 2006