Locus 1827

Sequence ID 2L_DroMel_CAF1
Location 5,046,304 – 5,046,406
Length 102
Max. P 0.934713
window2934

overview

Window 4

Location 5,046,304 – 5,046,406
Length 102
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 73.96
Mean single sequence MFE -13.98
Consensus MFE -10.55
Energy contribution -11.05
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.75
SVM decision value 1.24
SVM RNA-class probability 0.934713
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5046304 102 + 22407834
CAGUUUAGGCAACUAUCACAAGGUGGAUUCGCCUGAAUAGACCCGCAUCCCAUCCAGUCCAAAACAAACAAAAAA-AAAAAGAGCAGCAAUCAACCAAGAACU-
..(((((((((((((((....))))).)).)))))))).....................................-...........................- ( -13.40)
>DroSec_CAF1 9956 94 + 1
CAGUUUAGGCAACUAUCACAAGGUGGAUUCGCCUGAAUAGAGACGCAUC-----CAAUCCAAAACAAACAAA----AAAAAGAGCAGCAAUCAACCAAGAACU-
.(((((((....)).......(((((((.((.((......)).)).)))-----).................----.....((.......)).)))..)))))- ( -13.60)
>DroSim_CAF1 10416 103 + 1
CAGUUUAGGCAACUAUCACAAGGUGGAUUCGCCUGAAUAGAGACGCAUCCCAUCCAAUCUAAAACAAACAAAAAAAAAAAAGAGCAGCAAUCAACCAAGAACU-
..(((((((((((((((....))))).)).)))))))).................................................................- ( -13.40)
>DroEre_CAF1 9862 84 + 1
CAGUUUAGGCAACUAUCACAAGGUGGAUUCACCUGAAUAGGGG--G-----AUACAAUCCAAAACAAAA------------AAACAGCAAUCAACCAAGAACU-
.(((((((....)).......(((.(((((.(((.....)))(--(-----((...)))).........------------.....).)))).)))..)))))- ( -15.30)
>DroYak_CAF1 10001 80 + 1
CAGUUUAGGCAACUAUCACAAGGUGGAUUCGCCUGAAUAG-----------AUCCAGUCCCAAACAUA-------------UAACAGCAAUCAACCAAGAACUA
..(((((((((((((((....))))).)).))))))))..-----------.................-------------....................... ( -13.40)
>DroAna_CAF1 11539 81 + 1
CAGUUUAGGCAACUAUCACAAGGUGGAUUCUCCCGAAUAAGGACAC---CCCUCCUAUUCGAAACAAC-AAA-------AAU-----------ACCCGCAACU-
..((.(((....)))..))..(((((.....))((((((.(((...---...))))))))).......-...-------...-----------))).......- ( -14.80)
>consensus
CAGUUUAGGCAACUAUCACAAGGUGGAUUCGCCUGAAUAGAGACGC_____AUCCAAUCCAAAACAAACAAA_______AAGAGCAGCAAUCAACCAAGAACU_
..(((((((((((((((....))))).)).)))))))).................................................................. (-10.55 = -11.05 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:11 2006