Locus 1825

Sequence ID 2L_DroMel_CAF1
Location 5,034,220 – 5,034,340
Length 120
Max. P 0.783785
window2929

overview

Window 9

Location 5,034,220 – 5,034,340
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.28
Mean single sequence MFE -49.13
Consensus MFE -29.34
Energy contribution -29.68
Covariance contribution 0.34
Combinations/Pair 1.37
Mean z-score -1.70
Structure conservation index 0.60
SVM decision value 0.57
SVM RNA-class probability 0.783785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5034220 120 + 22407834
AGAUGCCUCCGAGAAAGGACAAAAGGGUGAACCCGGUCCAUCCGGACUCCGCGGCGAUACAGGUCCGGCCGGAACGCCCGGUUGGCCAGGAGAGAAGGGUUUGCCCGGUCUGGCUGUUCA
.((.(((((((.((..((((....(((....))).)))).))))))((((..((((((....)))(((((((.....)))))))))).))))(((.(((....)))..))))))...)). ( -53.80)
>DroVir_CAF1 22161 120 + 1
AGAUGCUUCCGAAAAGGGACAAAAGGGUGAACCCGGUGUCUCAGGACUACGUGGUCAAGAUGGUCUACCCGGAGCUCCAGGUCAACCUGGCGAGAAAGGUUUGCCUGGCAUUGCCGUCCA
.((((..((((....((((((...(((....)))..)))))).(((((((........).))))))...))))((.((((((.(((((........))))).))))))....)))))).. ( -46.50)
>DroPse_CAF1 20290 120 + 1
AGAUGCUUCCGAAAAGGGACAGAAGGGUGAACCCGGUCUGUCUGGACUGCGCGGUGAUCCUGGAGUAUCCGGUGAGCCUGGACUGCCUGGAGAAAAGGGAUUGCCCGGUAUGGCUGUAUA
..((((..(((.....(((((((.(((....)))..)))))))......((.((..(((((......(((((..((......))..))))).....)))))..))))...)))..)))). ( -46.10)
>DroYak_CAF1 18859 120 + 1
UGACGCCUCCGAGAAGGGACAAAAGGGUGAGCCCGGUCUAUCUGGACUUCGCGGCGACACAGGACCGACCGGACCGCCCGGUUGGCCAGGCGAGAAGGGUUCGCCCGGUGUGGCUGUUCA
.(((((((((.....)))(((...(((((((((((((((....)))))(((((....)...((.((((((((.....))))))))))..))))...))))))))))..)))))).))).. ( -58.60)
>DroMoj_CAF1 22157 120 + 1
CGACGCUUCCGAAAAGGGACAAAAGGGCGAGCCCGGUGUCUCCGGAUUGCGCGGUCAAGAUGGCUUACCCGGUGCCCCUGGACUGCCAGGCGAGAAGGGUUUACCUGGAAUUGCUGUACA
....((.((((....((((((...(((....)))..))))))))))..))((((.(((...((...((((....(.(((((....))))).)....))))...)).....)))))))... ( -43.70)
>DroPer_CAF1 20313 120 + 1
AGAUGCUUCCGAAAAGGGACAGAAGGGUGAACCCGGUCUGUCUGGACUGCGCGGUGAUCCUGGAGUAUCCGGUGAGCCUGGACUGCCUGGAGAAAAGGGAUUGCCCGGUAUGGCUGUAUA
..((((..(((.....(((((((.(((....)))..)))))))......((.((..(((((......(((((..((......))..))))).....)))))..))))...)))..)))). ( -46.10)
>consensus
AGAUGCUUCCGAAAAGGGACAAAAGGGUGAACCCGGUCUAUCUGGACUGCGCGGUGAUACUGGACUACCCGGAGCGCCUGGACUGCCAGGAGAGAAGGGUUUGCCCGGUAUGGCUGUACA
..((((((((......))).....(((((((((((((((....))))).............((....(((((.....)))))...)).........)))))))))))))))......... (-29.34 = -29.68 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:07 2006