Locus 1823

Sequence ID 2L_DroMel_CAF1
Location 5,030,996 – 5,031,116
Length 120
Max. P 0.594325
window2927

overview

Window 7

Location 5,030,996 – 5,031,116
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.00
Mean single sequence MFE -51.17
Consensus MFE -29.98
Energy contribution -31.06
Covariance contribution 1.09
Combinations/Pair 1.39
Mean z-score -1.56
Structure conservation index 0.59
SVM decision value 0.12
SVM RNA-class probability 0.594325
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5030996 120 + 22407834
AGAAUUGUACGGCCGGAUAUGCGGGCUGUGUGCCCAAGUGCAUAGCGGAGAAGGGCAACCGUGGUCUGCCGGGCCCUCUUGGACCCACGGGAUUGAAGGGCGAAAUGGGUUUCCCUGGCA
...........(((((........((((((..(....)..))))))(((((..((((((....)).))))..(((((.(..(.((....)).)..))))))........)))))))))). ( -45.70)
>DroVir_CAF1 19027 120 + 1
AGAACUGUACAUCCGGCUUUGCGGGCUGUAUGCCCAAGUGCAUUGCCGAGAAGGGUAAUCGCGGCCUGCCGGGUCCCGAGGGUCAGACGGGACCCAAGGGUAUUAAGGGUUAUUCGGGCC
....(((...(((((((...((((((.....))))..(((.((((((......))))))))).))..)))((((((((.........))))))))...........))))....)))... ( -48.40)
>DroPse_CAF1 17124 120 + 1
AAAACUGUACAGCCGGAUACGCCGGCUGUGUGCCCAAAUGCAUUGCCGAGAAGGGUAACCGCGGUCUGCCAGGUCCAUUGGGUCCCACCGGACCCAAGGGUGUCUCGGGCUUUCCGGGUC
.......(((((((((.....))))))))).((((....((.(((((......)))))..))((...(((.((.((.((((((((....)))))))).))...))..)))...)))))). ( -53.40)
>DroMoj_CAF1 19012 120 + 1
AGAACUGCACUGCUGGGUAUGCGGGCUGCGUGCCCAAGUGUAUUGCCGAGAAGGGUAAUCGUGGUCUGCCCGGACCCGAGGGUCAGACUGGACCGAAGGGUCUGCAAGGUUAUGCGGGAC
....(((((..(((((((((((.....))))))))...(((((((((......))))))...(((((((((........))).))))))(((((....)))))))).)))..)))))... ( -51.40)
>DroAna_CAF1 17036 120 + 1
AGAACUGUACGGCCGGAUACGCGGGCUGUGUGCCCAAGUGCAUAGCGGAGAAGGGCAACCGGGGUCUGCCAGGACCCUCGGGCCCCUCAGGACCAAAGGGUGCGCAAGGAUUCCCCGGCA
...........(((((......((((((((..(....)..)))))).(((..((((..(((((((((....)))))).))))))))))....))...((((.(....).)))).))))). ( -54.70)
>DroPer_CAF1 17147 120 + 1
AAAACUGUACAGCCGGAUACGCCGGCUGUGUGCCCAAAUGCAUUGCCGAGAAGGGUAACCGCGGUCUGCCAGGUCCAUUGGGUCCCACCGGACCCAAGGGUGUCUCGGGCUUUCCGGGUC
.......(((((((((.....))))))))).((((....((.(((((......)))))..))((...(((.((.((.((((((((....)))))))).))...))..)))...)))))). ( -53.40)
>consensus
AGAACUGUACAGCCGGAUACGCGGGCUGUGUGCCCAAGUGCAUUGCCGAGAAGGGUAACCGCGGUCUGCCAGGUCCCUUGGGUCCCACCGGACCCAAGGGUGUCAAGGGUUUUCCGGGCC
....(((...((((......(((((((((((((((.................)))))..)))))))))).....(((..((((((....))))))..))).......))))...)))... (-29.98 = -31.06 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:04 2006