| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,027,584 – 5,027,678 |
| Length | 94 |
| Max. P | 0.543939 |
| Location | 5,027,584 – 5,027,678 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 86.52 |
| Mean single sequence MFE | -16.21 |
| Consensus MFE | -10.86 |
| Energy contribution | -10.68 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5027584 94 - 22407834 AA--CCAUAACCAGAGCCCGGAGUCACAUCUACAUCCAAACCUCCAUCCAAAUCUCCAUCCAAAACAUCCAUCCGGGCCUGUCCCUGGCCUGUGCC ..--(((....(((.(((((((.................................................))))))))))....)))........ ( -17.99) >DroSim_CAF1 10156 94 - 1 AAUCCCAUAACCAGAGCCC-GAGUCACAUCUACAUCCAAACCUCCGACCAAAUCUCCAUCCAAA-CAUCCAUCCGGGCCUGUCCCUGGCCUGUGCC ....(((....(((.((((-(((......))..............((.....))..........-........))))))))....)))........ ( -13.20) >DroEre_CAF1 12153 92 - 1 AA--CCGAAGCCAGAACCA-GAGCCACAUCUACAUUCAAACAUCCAGCCAAAUCUCCAACGAAA-CAGCCAUCCAGGCCUGUCCCUGGCCUGUGCC ..--.....(((((....(-((......)))...............((((..((......)).(-(((((.....)).))))...))))))).)). ( -15.30) >DroYak_CAF1 12091 92 - 1 AG--CCAAAGCCAUAGAUG-GAGCAACAUCUACAUCCAAACCUCCAGCCAAAUCUCCAUCCAAA-CAUCCAUCCGGGCCUGUCCCUGGCCUGUGCC ..--.....((....((((-(((......((..............))......)))))))....-........((((((.......)))))).)). ( -18.34) >consensus AA__CCAAAACCAGAGCCC_GAGCCACAUCUACAUCCAAACCUCCAGCCAAAUCUCCAUCCAAA_CAUCCAUCCGGGCCUGUCCCUGGCCUGUGCC .........................................................................((((((.......)))))).... (-10.86 = -10.68 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:03 2006