Locus 1815

Sequence ID 2L_DroMel_CAF1
Location 5,012,923 – 5,013,023
Length 100
Max. P 0.999832
window2918

overview

Window 8

Location 5,012,923 – 5,013,023
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 66.00
Mean single sequence MFE -33.07
Consensus MFE -18.60
Energy contribution -19.60
Covariance contribution 1.00
Combinations/Pair 1.14
Mean z-score -2.41
Structure conservation index 0.56
SVM decision value 4.19
SVM RNA-class probability 0.999832
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5012923 100 - 22407834
ACAGAUGGCAAUUACAGGGCAAACUGGCAAUCCGGCCGGUCUUCCAGUCCUGGCUCUCAGUCCAGUCCUGGUUCCAGCUCCGGAUCCUGGUCAUCUGGAU
.((((((((.....((((((......)).((((((..((....((((..(((((.....).))))..))))..))....))))))))))))))))))... ( -39.80)
>DroSim_CAF1 2887 82 - 1
ACAGAUGGCAAUUACAGGUCAAGCUGGACUUCGGGCGCAGCUU------------------CAAGUCCUGGUUCCAACUCCGGAUCCUGGUCAUCUGGAU
.((((((((.....((((.((((((((.(....).).))))))------------------...).))))..(((......))).....))))))))... ( -30.00)
>DroYak_CAF1 2711 94 - 1
ACAGAUUUCAAUUAUAGGUCAGGCUGGUCAGCCGGCCAGACAUCCAGCCCUGGCUCCCAGUCCAAUCCCGGAUACA------UAUCCCGGUCAUCUGGAC
.................(((.((((((....)))))).)))....(((....))).((((......((.((((...------.)))).))....)))).. ( -29.40)
>consensus
ACAGAUGGCAAUUACAGGUCAAGCUGGACAUCCGGCCAGACUUCCAG_CCUGGCUC_CAGUCCAGUCCUGGUUCCA_CUCCGGAUCCUGGUCAUCUGGAU
.((((((((........(((..(((((....)))))..)))..........................(.((.(((......))).)).)))))))))... (-18.60 = -19.60 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:55 2006