Locus 1814

Sequence ID 2L_DroMel_CAF1
Location 5,011,024 – 5,011,135
Length 111
Max. P 0.672114
window2917

overview

Window 7

Location 5,011,024 – 5,011,135
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 91.58
Mean single sequence MFE -31.23
Consensus MFE -27.56
Energy contribution -28.00
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 0.29
SVM RNA-class probability 0.672114
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5011024 111 - 22407834
UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUUCUGUCUACUUUUCGUAGUGAGUAGCACUGAUAGGGCUGGCAAAAUAGCUAUAUUUCUU
..........(((((((((((((((.(.....).))))))))))..(((((((....((((.....)))).)))))))......)))))((((......))))........ ( -34.20)
>DroSim_CAF1 566 110 - 1
UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUUCUGUCUACGUUUCGUAGAGAGUGUCACUGAUAGGGCUGGCAAAACAGCUAU-UUUUUU
..((((((..((...((((((((((.(.....).))))))))))..))........((((((...)))))))))))).........(((((......)))))..-...... ( -31.60)
>DroEre_CAF1 401 110 - 1
UCACACUUUUGCCUUAGUGUUUGUCCGUGUGACUGGCAAAUACUCCGCUACUGCUGUCUACGUUUUGUUGUGAGUGGCACUGAUAGGACUGGCAAAACAGCUUUG-UUUUU
......(((((((..(((.((((((.((((.(((.((((..((...((....)).(....)))....)))).))).)))).))))))))))))))))........-..... ( -28.80)
>DroYak_CAF1 614 110 - 1
UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUGCUGUCUACGUUUCGCUGUGAGUGGCACUGAUAAGGCUGGCAAAACAGCUAUG-UUUUU
..........(((((((((((((((.(.....).))))))))))..((((((((.((.........)).)).))))))......)))))((((......))))..-..... ( -30.30)
>consensus
UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUGCUGUCUACGUUUCGUAGUGAGUGGCACUGAUAGGGCUGGCAAAACAGCUAUG_UUUUU
......(((((((..((((((((((.(.....).))))))))))..((((((.(...((((.....)))).)))))))............))))))).............. (-27.56 = -28.00 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:54 2006