Locus 1813

Sequence ID 2L_DroMel_CAF1
Location 5,005,282 – 5,005,387
Length 105
Max. P 0.843272
window2916

overview

Window 6

Location 5,005,282 – 5,005,387
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 84.38
Mean single sequence MFE -43.63
Consensus MFE -33.66
Energy contribution -35.57
Covariance contribution 1.90
Combinations/Pair 1.03
Mean z-score -2.71
Structure conservation index 0.77
SVM decision value 0.76
SVM RNA-class probability 0.843272
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5005282 105 + 22407834
GAUUCAAUGAGAGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG
.............(((((.(....).)).)))..((((((((....))))))))((..(((((((((((.((.(((......))).)).)))))))))))..)). ( -48.00)
>DroSec_CAF1 10967 105 + 1
GAUUCAAUGAGCGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCACGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG
.............(((((.(....).)).)))..((((((((....))))))))((..((((((((((((((.(((......))).))))))))))))))..)). ( -52.00)
>DroSim_CAF1 11076 105 + 1
GAUUCAAUGAGCGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG
.............(((((.(....).)).)))..((((((((....))))))))((..(((((((((((.((.(((......))).)).)))))))))))..)). ( -48.00)
>DroEre_CAF1 11217 105 + 1
GAUUGAAUGAGAGGGCAACCGCAAGUCUCACCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCGUUCGAUUUGCCGCCGAGUUUGGGG
..(((..(((((((....)).....))))).)))((((((((....))))))))((..((((((((((((((((......).))))...)))))))))))..)). ( -46.00)
>DroYak_CAF1 11333 105 + 1
GAUUCAGUGAGAGGGCAACCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCCCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG
......((((((((....)).....))))))...((((((((....))))))))((..(((((((((((.((.(((......))).)).)))))))))))..)). ( -49.10)
>DroAna_CAF1 10889 91 + 1
AAAUAAAAGAGAGGCCACCCACAAGCCCCACAAAGUUGAGCAACCCCGCUUAGCCCUGAACUUUGUCUCC-------------UACGGCGUCUACGAGU-UGGGA
.....((((.(.(((.........))).).((..(((((((......)))))))..))..))))...(((-------------((...((....))...-))))) ( -18.70)
>consensus
GAUUCAAUGAGAGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG
............((....))..............(((((((......)))))))(((((((((((((((.((.(((......))).)).))))))))))))))). (-33.66 = -35.57 +   1.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:53 2006