Locus 1812

Sequence ID 2L_DroMel_CAF1
Location 5,003,789 – 5,003,881
Length 92
Max. P 0.879367
window2915

overview

Window 5

Location 5,003,789 – 5,003,881
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 89.89
Mean single sequence MFE -23.03
Consensus MFE -18.73
Energy contribution -19.73
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.72
Structure conservation index 0.81
SVM decision value 0.91
SVM RNA-class probability 0.879367
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5003789 92 - 22407834
UC---AUAUUCCUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC
..---............(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.00)
>DroSec_CAF1 9451 92 - 1
UC---AUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC
..---............(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.00)
>DroSim_CAF1 9539 92 - 1
UC---AUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC
..---............(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.00)
>DroEre_CAF1 9667 92 - 1
UU---GUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCAGUAC
..---.........((((---(.(..((((((.-...((((((((((...........)))))..)))))(((((...))))).))))))..)))))). ( -25.20)
>DroYak_CAF1 9739 92 - 1
UC---GUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC
..---(((......)))(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.70)
>DroAna_CAF1 9294 94 - 1
CCAUAAUAUGCACUUGCCGAGGCAAGCAGUGCCCCCAAAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGGGC-----CAUGCAUUGUCUUUUUUU
.........((....)).((((((((((..(((((.(((..((((((...........))))))..))).).))))-----..))).)))))))..... ( -24.30)
>consensus
UC___AUAUUCAUUUGCU___GCAAGCAGUGCC_CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC
.............((((....))))(((((((.....((((((((((...........)))))..)))))(((((...))))).)))))))........ (-18.73 = -19.73 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:52 2006