Locus 1811

Sequence ID 2L_DroMel_CAF1
Location 4,997,114 – 4,997,206
Length 92
Max. P 0.624426
window2914

overview

Window 4

Location 4,997,114 – 4,997,206
Length 92
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.37
Mean single sequence MFE -20.24
Consensus MFE -16.31
Energy contribution -16.70
Covariance contribution 0.39
Combinations/Pair 1.07
Mean z-score -1.32
Structure conservation index 0.81
SVM decision value 0.19
SVM RNA-class probability 0.624426
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4997114 92 - 22407834
UUAAAAU-----------------ACACAAAAAAAUGGCAGGCGGCAGCAAACGCUACUCACGCAACAACUCCAAUGGCAAUUUUCAGCCGCUUCCAGAACGCGGACCA
.......-----------------...........(((.((((((((((....)))......((.............))........))))))))))............ ( -19.02)
>DroSec_CAF1 2895 91 - 1
UUAAAAU-----------------ACACAAA-AAAUGGCAGGCGGCAGCAAGCGCUACUCACGCAACAACUCCAAUGGCAACUUUCAGCCGCUUCCAGAACGCGGACCA
.......-----------------.......-...(((.(((((((.....(((.......)))............(....).....))))))))))............ ( -20.50)
>DroSim_CAF1 2888 91 - 1
UUAAAAU-----------------ACACAAA-AAAUGGCAGGCGGCAGCAAGCGCUACUCACGCAACAACUCCAAUGGCAACUUUCAGCCGCUUCCAGAACGCGGACCA
.......-----------------.......-...(((.(((((((.....(((.......)))............(....).....))))))))))............ ( -20.50)
>DroEre_CAF1 2875 106 - 1
UCAAAACUAAA--AAGCUAAGAAAACACCAA-ACAUGGCAGGUGGCAGCAAGCGCUACUCUCGCAACAACUCCAACGGCAACUUUCAGCCGCUUCCAGAACGCGGACCA
...........--..............((..-...(((.(((((((.....(((.......)))............(....).....))))))))))......)).... ( -19.90)
>DroYak_CAF1 2881 106 - 1
UUAAAACUAAA--AAGCUAAGAAAACGGCAA-AAAUGGCAGGCGGCAGCAAGCGCUACUCACGCAACAAUUCUAACGGCAACUUUCAGCCGCUUCCAGAACGCGGACCA
...........--............(.((..-...(((.(((((((.....(((.......)))............(....).....))))))))))....)).).... ( -24.10)
>DroAna_CAF1 2562 103 - 1
GUAAAACUAAACAAAGUUUAAAA-----AAA-AAAUGGCAGGCGGCAGCAAACGCUAUUCACGCAACAAUUCCAACGGCAACUUCCAGCCACUACCCGAGCGCGGACCA
((((((((......)))))....-----...-...((((..(((..(((....))).....)))............(....).....)))).)))(((....))).... ( -17.40)
>consensus
UUAAAAC_________________ACACAAA_AAAUGGCAGGCGGCAGCAAGCGCUACUCACGCAACAACUCCAACGGCAACUUUCAGCCGCUUCCAGAACGCGGACCA
...................................(((.((((((((((....)))......((.............))........))))))))))............ (-16.31 = -16.70 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:51 2006