Locus 1810

Sequence ID 2L_DroMel_CAF1
Location 4,995,906 – 4,996,022
Length 116
Max. P 0.518241
window2913

overview

Window 3

Location 4,995,906 – 4,996,022
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 83.84
Mean single sequence MFE -24.90
Consensus MFE -12.98
Energy contribution -13.50
Covariance contribution 0.52
Combinations/Pair 1.15
Mean z-score -2.32
Structure conservation index 0.52
SVM decision value -0.03
SVM RNA-class probability 0.518241
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4995906 116 - 22407834
GUCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUUGCCCUAAGUAGCUUGCUACCUGAGCAACCUAACAAAUCAGUUCAAACUAAUGACCACUUAAUGAGUUGGCAAAUCC
((((....(((((...((((((((((((..(((((((.....))..)))))..))))))))..))))............(.(((......))).)....)))))..))))...... ( -26.70)
>DroSec_CAF1 1689 107 - 1
GCCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUUGCCCUAAGUAGUUUG---------CACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGUAAAUCC
((((....(((((..((((.((((((..((.....)).))))))))))(((((((---------.((............)).)))))))..........)))))..))))...... ( -23.40)
>DroSim_CAF1 1702 91 - 1
GCCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUU-------------------------ACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGCAAAUCC
((((....(((((.......((((((..((.....)).))-------------------------)))).........((.(((......))).))...)))))..))))...... ( -19.00)
>DroEre_CAF1 1672 112 - 1
GCCAUAUAUCAUUUCCUUAUGGGAAGCACCUUACUGGAUUUCCCUUAUUAGUU----ACCUGAGCACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGCAAAUCC
((((....(((((.......((((((..((.....)).))))))(((((((((----...(((((..............))))))))))))))......)))))..))))...... ( -27.14)
>DroYak_CAF1 1690 116 - 1
GCCAUAUAUCAUUGCCUUGUGGGUAGCACCUUACUGGAUUUCCCUUAUUAGUUAGCUACCUGAGCACCCUAACAAAUCAGUUCAAACAAAUCACCUCUCAAUGAGUUGGCAAAUCC
((((....((((((....(((((((((..((....((.....)).....))...))))))(((((..............))))).......)))....))))))..))))...... ( -28.24)
>consensus
GCCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUUGCCCUAAGUAGUU_G__ACCUGAGCACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGCAAAUCC
((((....(((((.......((((((..((.....)).))))))..........................(((......))).................)))))..))))...... (-12.98 = -13.50 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:50 2006