Locus 181

Sequence ID 2L_DroMel_CAF1
Location 561,315 – 561,423
Length 108
Max. P 0.533955
window271

overview

Window 1

Location 561,315 – 561,423
Length 108
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 79.10
Mean single sequence MFE -34.84
Consensus MFE -17.80
Energy contribution -18.97
Covariance contribution 1.17
Combinations/Pair 1.32
Mean z-score -1.93
Structure conservation index 0.51
SVM decision value 0.00
SVM RNA-class probability 0.533955
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 561315 108 - 22407834
ACGGCAACA---------GUUCCGGUAGCACCUGCCACUCCUGCUGAGGCGCCAUCUCCUCUGGCUCCCUCCACUCCGCCAUCGACUCCCACCUCGGUGCCGCCCUCUGCAGCGACA
..(....).---------.....(((((...)))))..((((((.((((.((((.......))))...........((.((((((........)))))).)).)))).)))).)).. ( -31.40)
>DroSec_CAF1 1617 108 - 1
ACGGCCCCA---------GUUCCGGUGGCACCUGCCACUCCUGCUGAGGCGCCAUCUCCCCUGGCUCCUUCCACUCCGCCAUCGACUCCCACCUCGGUGCCGCCCUCUGCAGCGGCA
..(((..((---------((...((((((....))))))...))))(((.((((.......)))).)))........)))(((((........)))))(((((........))))). ( -40.90)
>DroSim_CAF1 1617 108 - 1
ACUGCCCCA---------GUUCCGGUGGUACCUGCCACUCCUGCUGAGGCGCCAUCUCCCCUGGCACCUUCCACUCCGCCAACGACUCCCACCUCGGUGCCGCCCUCUGCAGCGGCA
...(((.((---------((...((((((....))))))...)))).)))(((.........((((((...........................))))))((........))))). ( -35.93)
>DroEre_CAF1 1594 108 - 1
ACGGCCCCA---------GUUCCGUUGGCACCUGCCACUCCAGCUGAGCCGCCAUCUCCUUUGGCUCCGUCCACUCCGCCAUCGACUCCCACAUCCGUGCCACCAUCUGCAGCGGCA
..(((..((---------(((....((((....))))....))))).)))((((.......))))..........((((....((....(((....)))......))....)))).. ( -26.80)
>DroYak_CAF1 1520 108 - 1
ACGGCCCCA---------AUUCCGUUGGCGCCUGCCACUCCUGUUGAGGCGCCAUCUCCUUUGGCUCCCUCCACGCCGCCAACGACUCCCACAUCCGUGCCACCAUCUGCAGCGGCA
..((..(((---------(......((((((((.(.((....)).)))))))))......))))..))......(((((..(((...........)))((........)).))))). ( -34.30)
>DroPer_CAF1 1292 117 - 1
GCUGCCCCGCCGUCAGCUGCUCCUGCAGUAGCUCCUCCGUCACCAGAGGCGCCGUCGCCGAUGGUUCCAGCUACUCCGCCAUCGACCCCUUCGUCAGCUCCACCAUCGGCAUUAGCA
((((....(.((...(((((....))))).((.((((........)))).)))).)(((((((((...((((.....(....)(((......)))))))..)))))))))..)))). ( -39.70)
>consensus
ACGGCCCCA_________GUUCCGGUGGCACCUGCCACUCCUGCUGAGGCGCCAUCUCCUCUGGCUCCCUCCACUCCGCCAUCGACUCCCACCUCGGUGCCACCAUCUGCAGCGGCA
..(((.............((...((((((....))))))...))...((.((((.......)))).)).........)))..................(((((........))))). (-17.80 = -18.97 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:13 2006