Locus 1809

Sequence ID 2L_DroMel_CAF1
Location 4,987,212 – 4,987,332
Length 120
Max. P 0.569833
window2912

overview

Window 2

Location 4,987,212 – 4,987,332
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.54
Mean single sequence MFE -33.75
Consensus MFE -29.64
Energy contribution -29.25
Covariance contribution -0.39
Combinations/Pair 1.06
Mean z-score -1.29
Structure conservation index 0.88
SVM decision value 0.07
SVM RNA-class probability 0.569833
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4987212 120 + 22407834
ACGCUCGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGUGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUUUAUAU
((..(((((..((.(((((((.(((.((((.....)))).))).))))))))).....(((((((((((((..........)))))).)))))..)).)))))...))............ ( -33.00)
>DroVir_CAF1 7320 119 + 1
ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCGAGUGGUGGUGAUGCUGAAAGUGUCUUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAAU-UUAU
.((..(((((...(((((((.....(((((...((((((...(((((.(((((.....)))))))))))))))).)))))....)))))))..)))))..)).............-.... ( -34.90)
>DroGri_CAF1 7826 119 + 1
ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCGAGUGGUGGUGAUGCUGAAAGUGUCUUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU-AUAU
.((..(((((...(((((((.....(((((...((((((...(((((.(((((.....)))))))))))))))).)))))....)))))))..)))))..)).............-.... ( -34.90)
>DroWil_CAF1 12343 119 + 1
ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGUGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU-AUGA
((((((.....((.(((((((.(((.((((.....)))).))).)))))))))...))))))..(((((((..........)))))))(((((((..((.......))..)))))-)).. ( -32.90)
>DroMoj_CAF1 8269 119 + 1
ACGCUGGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCGAGUGGUGGUGAUGCUGAAAGUGUCUUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU-AUAU
.((.((((((...(((((((.....(((((...((((((...(((((.(((((.....)))))))))))))))).)))))....)))))))..)))).)))).............-.... ( -34.20)
>DroAna_CAF1 8736 120 + 1
ACGCUCGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGCGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUUUAUAU
((..(((((..((.(((((((.(((.((((.....)))).))).))))))))).......(((((((((((..........)))))).))))).....)))))...))............ ( -32.60)
>consensus
ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGUGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU_AUAU
(((((......((.(((((((.(((.((((.....)))).))).)))))))))....)))))..(((((((..........)))))))....(((((.........)))))......... (-29.64 = -29.25 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:49 2006