| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,986,195 – 4,986,303 |
| Length | 108 |
| Max. P | 0.663174 |
| Location | 4,986,195 – 4,986,303 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -34.03 |
| Consensus MFE | -22.12 |
| Energy contribution | -22.54 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4986195 108 - 22407834 CUCCAUGACGAUGCGCGGCAUAAUCGCUUCCACCUUGACAUCCAUGUACAUCAGAUUUGGCUCCUGCUCAACAUUGA---CGGCGGCCAUCUGUGUGCCAUUGGAG---------CCAUU .........((((.(((((......)))............((((.(((((.((((..(((((.(((.(((....)))---))).))))))))))))))...)))))---------))))) ( -31.60) >DroVir_CAF1 6254 120 - 1 UUCCAUGACCACGCGCGGCAUAAUGGCUUCCACCUUGACAUCCAUGUACAUCAGAUUUGGCUCCUGUUCAACGCUAAGCGCAGCGGCCAUCUGUGUACCAUUGGAGCCAUUCGAGGCAUU ..((((..((......))....))))......((((((..((((.(((((.((((..(((((.((((.(........).)))).))))))))))))))...)))).....)))))).... ( -36.60) >DroGri_CAF1 6760 120 - 1 UUCCAUGACCACGCGCGGCAUAAUGGCCUCCACCUUGACAUCCAUGUACGUCAGAUUUGGCUCCUGUUCGACGCUCAAUGCAGCGGCCAUCUGUGUACCAUUGGAGCCAUACGAGGCAUU ....(((.((......)))))....(((((.....((...((((.(((((.((((..(((((.((((..(.....)...)))).))))))))))))))...))))..))...)))))... ( -36.90) >DroWil_CAF1 11301 102 - 1 UUCCAACACCACACGCGGCAUUAUCGCCUCCACUUUGACAUCCAUGUACAUCAGACUGGGCUCUUCC---AGAUCCA---C---CAUCAGCUGUGUGCCAUUGGAG---------CCAUU ((((((...((((((((((......))).........................(((((((....)))---)).))..---.---.....)).)))))...))))))---------..... ( -24.20) >DroYak_CAF1 6486 117 - 1 CUCCAUCACGACACGCGGCAUAAUCGCUUCCACCUUGACAUCCAUGUACAUCAGAUUUGGCUCCUGCUCAACAUUGA---CGCCGGCCAUCUGUGUGCCAUUGGAGCCAUUGGAGCCAUU (((((.........((((.....)))).............((((.(((((.((((..(((((...(((((....)))---.)).))))))))))))))...)))).....)))))..... ( -32.40) >DroMoj_CAF1 7236 120 - 1 UUCCAUGACCACGCGCGGCAUUAUCGCCUCCACCUUGACGUCCAUGUACAUCAGAUUUGGCUCCUGCUCCAAGCUCAGCGCAGCGGCCAUCUGUGUGCCAUUGGAGCCAUAGGAGGCAUU ....(((.((......)))))....((((((....((.(.((((.(((((.((((..(((((.((((.(........).)))).))))))))))))))...))))).))..))))))... ( -42.50) >consensus UUCCAUGACCACGCGCGGCAUAAUCGCCUCCACCUUGACAUCCAUGUACAUCAGAUUUGGCUCCUGCUCAACACUCA___CAGCGGCCAUCUGUGUGCCAUUGGAGCCAU__GAGCCAUU ................(((......)))............((((.(((((.((((..(((((.(((..............))).))))))))))))))...))))............... (-22.12 = -22.54 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:47 2006