Locus 180

Sequence ID 2L_DroMel_CAF1
Location 560,856 – 560,952
Length 96
Max. P 0.870769
window270

overview

Window 0

Location 560,856 – 560,952
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 83.16
Mean single sequence MFE -34.75
Consensus MFE -24.91
Energy contribution -24.85
Covariance contribution -0.06
Combinations/Pair 1.19
Mean z-score -2.02
Structure conservation index 0.72
SVM decision value 0.87
SVM RNA-class probability 0.870769
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 560856 96 - 22407834
CCUCCAAAGCAAACUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACAGCCUCCCCGAAAUCGGCUGCAUCCCCAAAA
..((((........)))).....(((((((((((.((..((((.(((....(((.....)))....)))...))))..)).))))).))))))... ( -40.20)
>DroSec_CAF1 1155 96 - 1
CCUCCAAAGCAAGCUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACACCCUCCCCGAAAUCGGUUGCAUCCCCAAAA
..((((........)))).....(((((((((((.((..((((.(((....)))..((.((.....)).)).))))..)).))))).))))))... ( -34.10)
>DroSim_CAF1 1155 96 - 1
CCUCCAAAGCAAGCUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACACCCUCCCCGAAAUCGGUUGCAUCCCCAAAA
..((((........)))).....(((((((((((.((..((((.(((....)))..((.((.....)).)).))))..)).))))).))))))... ( -34.10)
>DroAna_CAF1 2203 96 - 1
GCAGCAAAGCAGGCUGCGCCAGCUGGUGGGCAGCAGAAGCCAGUGACACCUCCUUCGAAGACAUCGCUCUCGCCGAAAGCGCCAGCCUCUCCAAAA
((......))(((((((((....(((((((.(((.((((..((......)).))))((.....))))))))))))...))).))))))........ ( -30.60)
>consensus
CCUCCAAAGCAAGCUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACACCCUCCCCGAAAUCGGCUGCAUCCCCAAAA
..((((........)))).....(((((((((((.((....((((.....))))(((.(((......)))...)))..)).))))).))))))... (-24.91 = -24.85 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:11 2006