Locus 1793

Sequence ID 2L_DroMel_CAF1
Location 4,945,199 – 4,945,299
Length 100
Max. P 0.500000
window2889

overview

Window 9

Location 4,945,199 – 4,945,299
Length 100
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 84.70
Mean single sequence MFE -24.23
Consensus MFE -18.42
Energy contribution -18.78
Covariance contribution 0.37
Combinations/Pair 1.24
Mean z-score -1.69
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4945199 100 + 22407834
UGCUGCGCUCGAUGUAUUCCUUGGGCAGAUUGGAAAAGUUCUUCAACUUGCUGGCCAAAUAUUGCGUUAAACGCAUUUUGAAAGGUUAAUUCAAUUA--UUA
...((((.(..(((((....((((.(((.(((((.......)))))....))).))))....)))))..).))))..(((((.......)))))...--... ( -21.90)
>DroPse_CAF1 758 100 + 1
UGCUGCGCUCAAUGUACUCCUUGGGCAGAUUGGAGAAGUUCUUCAAUUUGCUGGCCAAAAACUGUGUUAUGCGCAUUUUGUAAUA--AUUUAAACAAAUUUA
...(((((..((..((....(((((((((((((((.....)))))))))))...))))....))..))..))))).(((((....--......))))).... ( -27.00)
>DroWil_CAF1 699 100 + 1
UGCUGCGCUCAAUGUAUUCCUUGGGCAGAUUGGAGAAAUUCUUCAAUUUGCUGGUCAAAAAUUGAGUUAAACGCAUUUUUAAUUAAUAAAUUAACAA--UUA
...((((((((((.....((...((((((((((((.....))))))))))))))......)))))).....))))...((((((....))))))...--... ( -25.50)
>DroYak_CAF1 723 100 + 1
UGCUGCGCUCAAUGUAUUCCUUGGGCAGAUUGGAAAAGUUCUUCAACUUGCUGGCCAAAUAUUGCGUUAAACGCAUCUUGAAGGAUUAAUUCAACAA--UUA
......((((((.(....).))))))...(((((..((((((((((..(((((((((.....)).))))...)))..))))))))))..)))))...--... ( -24.00)
>DroAna_CAF1 737 100 + 1
UGCUGCGCUCAAUGUACUCCUUGGGAAGAUUGGAGAAGUUCUUCAGUUUGCUAGCCAGGUAUUGUGUUAUUCGCAUUUUGUAUAUUUAAUUCAACAA--UUA
((.((.....(((((((..(((((..(((((((((.....))))))))).....)))))...((((.....))))....))))))).....)).)).--... ( -20.00)
>DroPer_CAF1 643 100 + 1
UGCUGCGCUCAAUGUACUCCUUGGGCAGAUUGGAGAAGUUCUUCAAUUUGCUGGCCAAAAACUGUGUUAUGCGCAUUUUGUAAUA--AUUUAAACAAAUUUA
...(((((..((..((....(((((((((((((((.....)))))))))))...))))....))..))..))))).(((((....--......))))).... ( -27.00)
>consensus
UGCUGCGCUCAAUGUACUCCUUGGGCAGAUUGGAGAAGUUCUUCAAUUUGCUGGCCAAAAAUUGUGUUAAACGCAUUUUGAAAUAUUAAUUCAACAA__UUA
.(((((((((((.(....).))))))(((((((((.....))))))))))).)))((((...((((.....)))).))))...................... (-18.42 = -18.78 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:26 2006