Locus 1791

Sequence ID 2L_DroMel_CAF1
Location 4,934,413 – 4,934,533
Length 120
Max. P 0.539100
window2887

overview

Window 7

Location 4,934,413 – 4,934,533
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -39.72
Consensus MFE -25.74
Energy contribution -26.38
Covariance contribution 0.64
Combinations/Pair 1.25
Mean z-score -1.54
Structure conservation index 0.65
SVM decision value 0.01
SVM RNA-class probability 0.539100
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4934413 120 - 22407834
UUGUGCGAGGUAAUGCAGUUGGAUCCCCUGCCCGUGGUGAUGGGCAUUAUAGUGCAUGCCAAUAUCGGAGGAGCCCUGACGCCCAUCGGAGAUCCCAUCAGUAUUAUAGUCAGCACCAAU
..((((((.(((((((.((.(((((.((.(((...)))(((((((.(((..((.(...((......))..).))..))).))))))))).))))).))..)))))))..)).)))).... ( -40.00)
>DroVir_CAF1 2229 120 - 1
UUGUGUGAGGUCAUGCAGCUGGAUCCCCUGCCCGUCGUCAUGGGCAUCAUUGUCCACGCGAACAUCGGCGGCGCCCUAACACCCAUUGGAGAUCCCAUCAGCAUUAUCGUCGGCACAAAU
(((((((((((.((((....(((((.((.(((..((((..((((((....)))))).)))).....)))((.(......).))....)).))))).....)))).))).)).)))))).. ( -38.30)
>DroGri_CAF1 1339 120 - 1
UUGUGCGAAGUGAUGCAACUGGAUCCCAUUCCAGUUGUGAUGGGCAUCAUUGUCCAUGCGAAUAUUGGUGGGGCUCUGUCGCCCAUUGGAGAUCCCAUCAGCAUCAUUAUUAGCACCAAU
..((((..(((((((((((((((......)))))))((.(((((((....)))))))))......(((((((((((((........))))).))))))))))))))))....)))).... ( -50.80)
>DroWil_CAF1 1140 120 - 1
CUAUGCGAGGUAAUGCAACUGGAUCCGUUGCCGGUGGUUAUGGGCAUUAUUGUUCAUGCAAAUAUCGGUGGGGCUCUGACACCCAUUGGAGAUCCAAUUAGCAUAAUCGUCAGCACCAAU
...((((((((.((((((.(((((((...(((((((..((((((((....))))))))....)))))))(((.........)))....).)))))).)).)))).))).)).)))..... ( -38.10)
>DroMoj_CAF1 2022 120 - 1
CUGUGCGAGGUCAUGCAACUGGAUCCCAUACCCGUUGUCAUGGGCAUCAUUGUCCACGCGAACAUCGGCGGAGCCCUGUCACCCAUCGGCGAUCCCAUUAGCAUCAUCGUGGGCACGAAC
.(((((..(((.((((((..(((((((......(((((..((((((....)))))).)).)))...(((((....))))).......)).)))))..)).)))).)))....)))))... ( -36.80)
>DroAna_CAF1 1127 120 - 1
UUGUGCGAAGUCAUGCAGCUAGAUCCUUUGCCCGUGGUGAUGGGUAUCAUAGUCCAUGCCAAUAUCGGAGGAGCUCUAACUCCCAUCGGAGAUCCCAUAAGCAUUAUAGUCAGCACCAAU
..((((((....((((...(((((((((((....((((.(((((........)))))))))....)))))))..)))).((((....)))).........)))).....)).)))).... ( -34.30)
>consensus
UUGUGCGAGGUCAUGCAACUGGAUCCCAUGCCCGUGGUGAUGGGCAUCAUUGUCCAUGCGAAUAUCGGAGGAGCCCUGACACCCAUCGGAGAUCCCAUCAGCAUUAUCGUCAGCACCAAU
..((((..(((.((((....(((((((.......((((.(((((((....))))))))))).....((..(........)..))...)).))))).....)))).)))....)))).... (-25.74 = -26.38 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:24 2006