Locus 1788

Sequence ID 2L_DroMel_CAF1
Location 4,885,586 – 4,885,676
Length 90
Max. P 0.683111
window2881

overview

Window 1

Location 4,885,586 – 4,885,676
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 74.69
Mean single sequence MFE -16.65
Consensus MFE -7.79
Energy contribution -8.02
Covariance contribution 0.23
Combinations/Pair 1.29
Mean z-score -1.88
Structure conservation index 0.47
SVM decision value 0.31
SVM RNA-class probability 0.683111
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4885586 90 + 22407834
-AGAUAUGAUGCUUGUAGUCA--AGUAACUUGACUAUAAAAUAUCCCUCGAAAAAAAGAAUAAAUUGUUUUGUUUUUCCACCCAUGGAA--ACCU
-.(((((.....(((((((((--((...))))))))))).)))))............(((((((....)))))))(((((....)))))--.... ( -18.80)
>DroGri_CAF1 51407 79 + 1
UAAAUAUAAUUCUUGCUGUCGGAAAUGUCUCGU---UCAACCUUAUUUCAA-CAAAAUAAUAAAAU---UUAAU-CCACGCAUAUGU--------
.............(((.((.(((..((......---.))...((((((...-..))))))......---....)-))))))).....-------- (  -4.80)
>DroSec_CAF1 35115 88 + 1
-AGUUAUGAUGCUUGUAGUCA--AGCAACUUGACUAUAAAAAAUCCCUAAA-AAAAGGAAUAAAUUGUUCUGUU-UUCCACCCAUGGAA--ACCU
-......(((..(((((((((--((...)))))))))))...)))......-....(((((.....)))))..(-(((((....)))))--)... ( -18.90)
>DroSim_CAF1 36238 88 + 1
-AGAUAUGAUGCUUGUAGUCA--AGCAACUUGACUAUAAAAGAUCCCUCGA-AAAAAGAAUAAAUUGUUCUGUU-UUCCACCCAUGGAA--UCCU
-.(((.(.(((.(((((((((--((...)))))))))))..........((-(((.(((((.....))))).))-)))....))).).)--)).. ( -19.80)
>DroEre_CAF1 36741 90 + 1
-AGAUAUGAUUCUUGUAGUCA--AGCAACUUGACUAUAAAAGAUCCCUCGA-AAAAAGAAUAAAUUGUUUUGUU-UUCCGCCUAUGGAAAAACAA
-.((...((((.(((((((((--((...)))))))))))..))))..))..-.................(((((-(((((....))).))))))) ( -18.40)
>DroYak_CAF1 36686 87 + 1
-AGAUAUGAAGCUUGUAGUCA--AGCAACUUGACUAUAAAAGAUCCCUCGA-AAAA---AUAAAUUGUUUUGUU-UUCCGCCUACGGAAAAACCA
-......((((((((((((((--((...)))))))))))..((....))..-....---.......))))).((-(((((....))))))).... ( -19.20)
>consensus
_AGAUAUGAUGCUUGUAGUCA__AGCAACUUGACUAUAAAAGAUCCCUCGA_AAAAAGAAUAAAUUGUUUUGUU_UUCCACCCAUGGAA__ACCU
............(((((((((.........)))))))))....................................(((((....)))))...... ( -7.79 =  -8.02 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:18 2006