Locus 1787

Sequence ID 2L_DroMel_CAF1
Location 4,883,395 – 4,883,494
Length 99
Max. P 0.561456
window2880

overview

Window 0

Location 4,883,395 – 4,883,494
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.71
Mean single sequence MFE -25.78
Consensus MFE -12.02
Energy contribution -13.05
Covariance contribution 1.03
Combinations/Pair 1.25
Mean z-score -2.12
Structure conservation index 0.47
SVM decision value 0.06
SVM RNA-class probability 0.561456
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4883395 99 + 22407834
ACAAGGGUUGCAAUUGGCUUCCCCUUAUAUUGGUCAUCUAUAGUGCCAAAACUGUCACUUGUCCUCCACCGCGGACAUAUCAGAGUCCACCUGCAACCC
....((((((((..(((((..........((((.(((.....)))))))..(((.....(((((........)))))...))))).)))..)))))))) ( -31.30)
>DroSec_CAF1 32925 98 + 1
ACAAGGG-UGCAAUUGGCUCCCCAUUAUAUUGGGCAUCUGUAGUGCCACAACUUUCACUUGUCCUCCACCGCGGACACAUCAAAGUCCACCUGCAACCC
....(((-((((..(((.............(((((((.....))))).))(((((....(((((........)))))....))))))))..))).)))) ( -26.80)
>DroSim_CAF1 34047 98 + 1
ACAAGGG-UGCAAUUGGCUCCCCAUUAUAUUGGGCAUCUGUAGUGCCACAACUUUCACUUGUCCUCCACCGCGGACACAUCAAAGUCCACCUGCAACCC
....(((-((((..(((.............(((((((.....))))).))(((((....(((((........)))))....))))))))..))).)))) ( -26.80)
>DroEre_CAF1 34551 98 + 1
ACAAGGG-UGCAAUUGGCUCCCCGUUAUAUUGGGAAUCUAUAGUGCCACAAAUCUCACUUGUCAUCAACCGCGGACACAUCGAAGUCCACCUGCAAUCC
....(((-((((..((((.(((((......))))........).))))........................((((........))))...))).)))) ( -20.10)
>DroYak_CAF1 34499 98 + 1
ACAAGGG-UGCAAUUGCCUUCCCGUUAAAUUGGGCAUCAACAGUGCCAAAAAUUUCACUUGUCCUCUACCGCGGACACAUCGAAGUCCACCUGCAAUCC
....(((-((((..((.((((..((.(((((.(((((.....)))))...))))).)).(((((........)))))....))))..))..))).)))) ( -25.40)
>DroAna_CAF1 38601 97 + 1
AAACAGC-UACAGUUCCUUCAGAAGGCUACUGCGCAGUUCCUGCGCUAUAAAUUGCAAUUGUGAGCCAUCGCGGAGGCUUCAACAU-CGCCUGAAAUCC
...(((.-....((((((((.((.(((....((((((...))))))......(..(....)..)))).))..)))))....)))..-...)))...... ( -24.30)
>consensus
ACAAGGG_UGCAAUUGGCUCCCCAUUAUAUUGGGCAUCUAUAGUGCCACAAAUUUCACUUGUCCUCCACCGCGGACACAUCAAAGUCCACCUGCAACCC
....(((.((((..((((.(((((......))))........).))))........................((((........))))...)))).))) (-12.02 = -13.05 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:17 2006