Locus 178

Sequence ID 2L_DroMel_CAF1
Location 555,953 – 556,073
Length 120
Max. P 0.584346
window268

overview

Window 8

Location 555,953 – 556,073
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.67
Mean single sequence MFE -45.54
Consensus MFE -26.80
Energy contribution -27.75
Covariance contribution 0.95
Combinations/Pair 1.22
Mean z-score -2.32
Structure conservation index 0.59
SVM decision value 0.10
SVM RNA-class probability 0.584346
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 555953 120 + 22407834
UUCAAUCGCUUGGCGUAAGGCACGAACGGAGCGGGCCUGUUCCAAGUGGCCCAUGCACACCUUGGCCACGUCCAAGCGAUUCGUGUGCACGCACAUCUUAGCCAGAUUUGUCCAGAUCAC
...(((((((((((((..(((.(((...(.(((((((..........)))))..)).)...))))))))).)))))))))).(((((....)))))........(((((....))))).. ( -43.10)
>DroVir_CAF1 5830 120 + 1
CUCGAUGGCCUGGCGAAGAGCGCGCACUGAGCGUGCCUGUUCCAAGUGGCCAAGGCACACCUUGGCCACGUCCAGGCGGUUGGUGUGCACGCACAUCUUGGCCAGAUUCGUCCAUAUCAC
...(((((.(((((.(((((((.(((((.(((.((((((..(...((((((((((....)))))))))))..))))))))).).)))).)))...)))).)))))..)))))........ ( -60.40)
>DroGri_CAF1 2289 120 + 1
UUCCAUUGCCUGCCGCAGGGCACGCACCGAUCGCGCCUGCUCCAAGUGACCCAUGCACACCUUGGCCACAUCCAGGCGACUCGUGUGCACGCACAUCUUGGCCAGAUUCGUCCAAAUCAC
......(((.((((....)))).)))..(((.(((.(((..(((((.......(((((((..(.(((.......))).)...))))))).......))))).)))...)))....))).. ( -34.34)
>DroWil_CAF1 1971 120 + 1
UUCCAUAGCCUGGCGCAGGGCGCGCACUGAACGUGCCUGUUCCAGAUGACCCAGACAAACCUUUGCCACAUCCAAACGUUGGGUGUGGACACACAUCCGUGCUAGGUUAGUCCAAAUCAC
.....(((((((((((.(((((((.......)))))))......((((...((((......))))(((((((((.....))))))))).....)))).)))))))))))........... ( -46.10)
>DroMoj_CAF1 2010 120 + 1
CUCCAUGGCCUGGCGCAAGGCUCGCACAGACCGGGCCUGCUCCAAGUGGCCCAUGCACACCUUGGCCACAUCCAGGCGAUUUGUGUGCACGCACAUCUUAGCCAGAUUAGUCCAGAUGAC
......(((((((.(((.((((((.......))))))))).)))...))))..(((((((..(.(((.......))).)...)))))))....(((((..((.......))..))))).. ( -43.80)
>DroAna_CAF1 1953 120 + 1
UUCCAUGGCCUGGCGCAGGGCACGUACCGACCGUGCCUGUUCCAGGUGGCCCAUGCACACCUUGGCCACGUCCAGCCGAUUAGUGUGCACACACAUCUUGGCCAAGUUCGUCCAAAUCAC
.....((((((((.(((((.((((.......))))))))).)))))(((((..(((((((.(((((........)))))...)))))))..........))))).......)))...... ( -45.50)
>consensus
UUCCAUGGCCUGGCGCAGGGCACGCACCGACCGUGCCUGUUCCAAGUGGCCCAUGCACACCUUGGCCACAUCCAGGCGAUUCGUGUGCACGCACAUCUUGGCCAGAUUCGUCCAAAUCAC
.......((((((....(((((((.......))))))).......((((((............))))))..)))))).....((((....)))).......................... (-26.80 = -27.75 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:04 2006