Locus 1779

Sequence ID 2L_DroMel_CAF1
Location 4,862,367 – 4,862,458
Length 91
Max. P 0.702734
window2862

overview

Window 2

Location 4,862,367 – 4,862,458
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.71
Mean single sequence MFE -29.05
Consensus MFE -18.19
Energy contribution -18.42
Covariance contribution 0.23
Combinations/Pair 1.29
Mean z-score -2.45
Structure conservation index 0.63
SVM decision value 0.36
SVM RNA-class probability 0.702734
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4862367 91 - 22407834
AGGCAGCCGGAAUUCUUGAGGCGUGUC--CCAGGACUCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUUAAGAUGCCCAG
.(((((((...........))).))))--..(((((.....))))).(((((.(((....)))..(((((((....)))))))....))))). ( -32.30)
>DroSec_CAF1 12578 85 - 1
AGGCAGCCCGAAUUCUUGAGGCGUGUCCCCCAGGACGCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAA--------G
.(((.((((((....))).)))((((((....))))))............)))(((....)))....(((((....)))))...--------. ( -27.80)
>DroSim_CAF1 13431 85 - 1
AGGCAGCCCGAAUUCUUGAGGCGUGUCCCCCAGGACGCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAA--------G
.(((.((((((....))).)))((((((....))))))............)))(((....)))....(((((....)))))...--------. ( -27.80)
>DroEre_CAF1 13271 91 - 1
CGGCAGCCCGAAUUCUUGAGGCGUGUC--CCAGGACAUAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAAGAUGCCCAG
.((((((((((....))).))).))))--..(((((.....))))).(((((.(((....)))....(((((....)))))......))))). ( -31.40)
>DroYak_CAF1 13121 91 - 1
CGGCAGCCCAAAUUCUUGAGGCGUGUC--CCAGGACGUAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAAGAUGCCCAG
.((((((((((....))).))).))))--..(((((.....))))).(((((.(((....)))....(((((....)))))......))))). ( -31.00)
>DroAna_CAF1 17344 81 - 1
AUGAAUC-CGGAGGCUCGAGGCGUGUC--UCGACAUCCAAUGUCUUCGGGCCCUUGGCAACAUAAUGAGCUAAAAAUAGCAGAA---------
(((...(-(((((((((((((....))--))))........))))))))(((...)))..))).....((((....))))....--------- ( -24.00)
>consensus
AGGCAGCCCGAAUUCUUGAGGCGUGUC__CCAGGACGCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAA________G
.(((.((((((....))).))).......(((((((.....)))))..)))))(((....)))....(((((....)))))............ (-18.19 = -18.42 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:01 2006