| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,857,786 – 4,857,881 |
| Length | 95 |
| Max. P | 0.555544 |
| Location | 4,857,786 – 4,857,881 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.93 |
| Mean single sequence MFE | -26.45 |
| Consensus MFE | -13.79 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.27 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4857786 95 - 22407834 UUGAGCAGAAACG--AAGC---G-UUUGGCCUGGAAACAGGCAAUAAAAUU-UGGUCAAAACGCCGAGC--AGGACGCAGAGAUAAGCGUCAAACAGUUUCACA .......(((((.--..((---.-....(((((....)))))........(-((((......)))))))--..(((((........))))).....)))))... ( -32.30) >DroPse_CAF1 10975 92 - 1 UUGAGCAGAAACU--GGGCAACGUUUUGGCCUGGAAACAGGCAAUAAAAUU-UGGUCAAAACGCAGAG--------GCAUAGAUAAGCGUCAAACAGU-UCACA .(((((......(--((.(((.(((((((((((....)))))..)))))))-)).))).......((.--------((........)).)).....))-))).. ( -27.00) >DroSec_CAF1 8116 83 - 1 UUGAGCAGAAACG--AAGC---G-UUUGUCCUGGAAACAGGCAAUAAAAUU-UGGUCAAAAC--------------GCAGAGAUAAGCGUCAAACAGUUUCACA .......(((((.--..((---(-(((..((((....))))(((......)-))....))))--------------))...(((....))).....)))))... ( -21.60) >DroWil_CAF1 11173 90 - 1 UUGAGCAGAAACAGAAAAC---G-UUUGGCCUGGAAACAGGCAAUAAAAUUUUGGUCAACA-GCAAAG--------GCAUAGAUAAGCGUCAAACAGU-UCACA ((((.(((((.((((....---.-))))(((((....))))).......))))).))))..-((....--------))...(((....))).......-..... ( -21.70) >DroAna_CAF1 12452 96 - 1 UGGAGCAGAAACG--GAGC---G-UUUGGCCUGGAAACAGGCAAUAAAAUU-UGGUCAAAACGCAAAGGCAAAGGCAUAUAGAUAAGCGUCAAACAGU-UCACA ..((((.......--..((---.-(((((((((....))))).......((-((((....)).))))..)))).)).....(((....))).....))-))... ( -25.20) >DroPer_CAF1 10828 92 - 1 UUGAGCAGAAACU--GGGCAACGUUUUGGCCUGGAAACAGGCAAUAAAAUU-UGGUCAAAACGCAGAG--------GCAUAGAUAAGCGUCAAACUGU-UCACA .(((((((....(--((.(((.(((((((((((....)))))..)))))))-)).))).......((.--------((........)).))...))))-))).. ( -30.90) >consensus UUGAGCAGAAACG__AAGC___G_UUUGGCCUGGAAACAGGCAAUAAAAUU_UGGUCAAAACGCAGAG________GCAUAGAUAAGCGUCAAACAGU_UCACA ((((((......................(((((....)))))............(((........................)))..)).))))........... (-13.79 = -14.13 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:54 2006