Locus 1773

Sequence ID 2L_DroMel_CAF1
Location 4,844,383 – 4,844,476
Length 93
Max. P 0.862750
window2847

overview

Window 7

Location 4,844,383 – 4,844,476
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 95.70
Mean single sequence MFE -23.03
Consensus MFE -21.10
Energy contribution -21.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.92
SVM decision value 0.84
SVM RNA-class probability 0.862750
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4844383 93 - 22407834
GCUUUAACUCGGCCCAAAACUUCAUGACCGCCACAGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCACCACCAAACGCAUCACCUGCAGCACC
(((.......(((.((........))...)))....(((((....))))).....((((..(((((..........)))))..)))))))... ( -23.40)
>DroEre_CAF1 8131 93 - 1
GUUUCAACUCGGCCCAAAACUUCAUGACCGCCACCGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCACCACCAAACGCAUCACCAGCAGCACC
..........(((.((........))...)))...(((((((....((.......))....(((((..........)))))..)))))))... ( -22.90)
>DroYak_CAF1 8085 93 - 1
GUUUCAACUCGGCCCAAAACUUCAUGACUGCCACCGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCUCCACCAAACGCAUCACCAGCAGCACC
..........(((.((........))...)))...(((((((....((.......))....(((((..........)))))..)))))))... ( -22.80)
>consensus
GUUUCAACUCGGCCCAAAACUUCAUGACCGCCACCGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCACCACCAAACGCAUCACCAGCAGCACC
..........(((.((........))...)))...(((((((....((.......))....(((((..........)))))..)))))))... (-21.10 = -21.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:48 2006